Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02005 ATGAAGTGTTTCTTCTTCAAAGACAAGTCCAAATCCGCCCCAGAATTGCAGAACCAAAATAGAAAGAAGAACCCAGCTGCGAATCGAGCAGCAAACTCAACTGGGTCAATATCATCGCCCAAGAGCGTGAAGGACTTGTACAGAGAGAAAGAACACAACTTTAGAGTTTTCACTCTGCAAGAGCTAAGAGAAGCCACAAATGGTTTCAATAGGACACTGAAAATTGGAGAAGGGGGTTTTGGGAGTGTGTATAGAGGATCCATTAGGCCTCAAGATGGACAAGGTGATCCAATTACAGTTGCTATCAAAAGGCTTAACACTCGTGGCTTCCAAACCTGCATTCTTATGTTGTTTTCTTTTCTTGTAAAGGGGCATAAAGAATGGCTTGCAGAAGTTCAATTTCTCAGCATTGTTAATCACCCAAATTTGGTCAAGCTTTTGGGTTATTGCTGCGTGGATGGAGAAAGAGGAATCCAAAGGCTTTTGGTGTATGAGTTCATGCCCAACAGGAGCTTAGAAGACCACCTTTTTCATAAAGTATTATTTCCCCCCCTGCCGTGGAAATTAAGATTGGAGATCATGCTTGGTGCTGCTCAAGGATTAGCTTATCTACATGAGGGACTGGAGATTCAGGTGATCTACCGAGATTTCAAATCTTCAAATGTTCTATTGGATGAAAATTTCCACGCAAAGCTCTCAGATTTCGGTCTTGCTAGGGAAGGACCACAAGGTGATGATACTCATGTATCTACTGCGGTGGTTGGTACACAAGGATATGCAGCACCAGAGTATATTGAAACAGGTCATCTCAGAGTTCAGAGTGATATGTGGAGTTTTGGTGTTGTACTCTATGAGATCCTCACAGGAAGACGATCATTGGAAAGAAACCGTCCAACAGCAGAACAAAAGCTACTAGATTGGGTTAAACAGTATCCAGCTGATAGTGGTAGATTCAGCATGATAATGGATCCACGTCTCATGAACCAATATTCACTTGGTGCAGCTCGCAAAATAGCGAAGTTGGCTGAAAGCTGCTTAAAGAAGAACCCTGAAGATAGACCTTCCATGAGTCAGATAGTGGAAGGATTGAAGCAAGCATTGGAATTTTCAGAAACTTCAAACACTCCTCAGAACACTGGTGAATCATCTCGGTCTAAATTGGTTAGGAAAGGTAAATAG 1179 0.4224 MKCFFFKDKSKSAPELQNQNRKKNPAANRAANSTGSISSPKSVKDLYREKEHNFRVFTLQELREATNGFNRTLKIGEGGFGSVYRGSIRPQDGQGDPITVAIKRLNTRGFQTCILMLFSFLVKGHKEWLAEVQFLSIVNHPNLVKLLGYCCVDGERGIQRLLVYEFMPNRSLEDHLFHKVLFPPLPWKLRLEIMLGAAQGLAYLHEGLEIQVIYRDFKSSNVLLDENFHAKLSDFGLAREGPQGDDTHVSTAVVGTQGYAAPEYIETGHLRVQSDMWSFGVVLYEILTGRRSLERNRPTAEQKLLDWVKQYPADSGRFSMIMDPRLMNQYSLGAARKIAKLAESCLKKNPEDRPSMSQIVEGLKQALEFSETSNTPQNTGESSRSKLVRKGK. 393
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02005 392 ProSitePatterns Protein kinases ATP-binding region signature. 75 103 IPR017441 GO:0005524
Seca11g02005 392 Gene3D Phosphorylase Kinase; domain 1 47 166 - -
Seca11g02005 392 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 167 377 - -
Seca11g02005 392 Pfam Protein kinase domain 71 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02005 392 SUPERFAMILY Protein kinase-like (PK-like) 52 361 IPR011009 -
Seca11g02005 392 PANTHER OS01G0588500 PROTEIN-RELATED 29 365 - -
Seca11g02005 392 MobiDBLite consensus disorder prediction 367 384 - -
Seca11g02005 392 MobiDBLite consensus disorder prediction 1 42 - -
Seca11g02005 392 ProSiteProfiles Protein kinase domain profile. 69 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02005 392 MobiDBLite consensus disorder prediction 367 392 - -
Seca11g02005 392 Gene3D Transferase(Phosphotransferase) domain 1 167 387 - -
Seca11g02005 392 MobiDBLite consensus disorder prediction 17 41 - -
Seca11g02005 392 CDD STKc_IRAK 75 365 - -
Seca11g02005 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca11g02005 Seca-Chr11 25620396 25623920 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02005 3 363 Glycoside Hydrolase AT3G07070 41.667 3.93e-87 268
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca11g02005 Pkinase 1.7e-45 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02005 - - gmx:100305403 635.18