Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01988 ATGGAGGTGAGAACAAAAAGTTTCATTGGTGATGTTGGCTTGGAAGACATAGGAGTTAAAAGTGTAGAAGAAATGTTTGATGAGAATGTAGATGAAGGAGTGGCCATTAACGGGTCAGATGACTTTTTGAAAATTGACCCATTGGTTCTTTCGGAGGAGGTGATCATGAATTTACATTTTGCTGATACGGAGGTTGCATATGATTTTTATAATTGGCCTGGGACTAGAACTGGTTGTCTTGCTAGAATGGGGGTTCGTGTTGATGCACACACTGGGCGTTGGCATGTGAGAGAGATCAGGGACATGCACAACCATCCGCTGTTGGTGAAGAAATTCTCTGGGATGTTGCCAGCCCATAGGAAGATGTCTGAAGCTGACATAATGCAAATGAACTTACGAAAGGTTGATTATAAGGTATATGGTGATGCTGTCGCATTCGATGCTACTTACAAAAAGAACAAGTATCACTTTCCATTAGTGGTGTTCTCTGGTATCAACCATCACAATCAAACTTCCATATTTGGTGTTGTTGTTGTTCCTGATGAAACTGAGGAAACATATGTATGGCTACTTGAACAGTTTCTAGTTGTAATGAAGGGAAAAACACATGTTTCAGTCATCACAGATGGTGACATTGCAATGAGCAATGCCATAAAAAGGGTGTTCCCAAATAGTCATAACAGATTATGTGCCTGTCACCTAATACGGAATGCTACATCAAAGATTAAAAATTCAAAAGTGGTTGGTCAATTCAAGAGATGTATGCTAGGAGACTATGAGATTCATGAATTTCAACGTCGATGGTTTCATATGGTTAGAATTAGGACATCTCGTTGTGAGGGGTTGAATGCTCAGCTAGGGAGATTCGTTCACTCCCGTCATGTTCTTGTTGACTTCCTTCAAAACTTTCAACATTGCCTTGAATCTTTACGCTACAAGGAATTGGAAGCCGACTTTGGCGCAACACTTGGGGAGTCTGTCCTGCAGACCAATTTGCATGCATTGGAGAGGTCGGCTTCAAGGATGTTCACTAGAGCAGTGTTTAAGTTATTTCGTCCTGCCATTTCTAGGGGAAGTACTATAAGGGTTAGGAAGTGTACACAACTTATGTCACAAATGATCTTCACCATGTCCAGGTATGGGAAACCAAACAAGGAGTGGCAAGTCTCTTATATGGAAGATCCATTACAGATAAAATGCACTTATCAAAGGATGGAATCATTTGGTCTACCATGTGATCACATTGTCGGTGTCATGGTTCATTTGAATATTGAAGAAATACTAAAGTGTCTAGTTCTTGATAGATGGACTATGGGAAAGAAGGAAAAATTGTATGACATTTCTGCTGGTCATAGTTCTATATGGGATTCAGTCTACACGGTTCATTGTGGTGCTTTAGAGTTTGTTTGTCGAAAAATGATCAGGCTGGCTGCAAAGTCATCAGATAGGTTTTTAGCTATTTGTGATTTGCTATATCGAAAAATTGAATCCATGGCTGAAGAAGATGATGATACTACCAATAATTTAGATGAAAACTGTGAAGAAATCCCTCACAGTGTCTTGCACGACCCAATAAGAGTTGGCACCAAGGGATGTGGTTCATAA 1605 0.4006 MEVRTKSFIGDVGLEDIGVKSVEEMFDENVDEGVAINGSDDFLKIDPLVLSEEVIMNLHFADTEVAYDFYNWPGTRTGCLARMGVRVDAHTGRWHVREIRDMHNHPLLVKKFSGMLPAHRKMSEADIMQMNLRKVDYKVYGDAVAFDATYKKNKYHFPLVVFSGINHHNQTSIFGVVVVPDETEETYVWLLEQFLVVMKGKTHVSVITDGDIAMSNAIKRVFPNSHNRLCACHLIRNATSKIKNSKVVGQFKRCMLGDYEIHEFQRRWFHMVRIRTSRCEGLNAQLGRFVHSRHVLVDFLQNFQHCLESLRYKELEADFGATLGESVLQTNLHALERSASRMFTRAVFKLFRPAISRGSTIRVRKCTQLMSQMIFTMSRYGKPNKEWQVSYMEDPLQIKCTYQRMESFGLPCDHIVGVMVHLNIEEILKCLVLDRWTMGKKEKLYDISAGHSSIWDSVYTVHCGALEFVCRKMIRLAAKSSDRFLAICDLLYRKIESMAEEDDDTTNNLDENCEEIPHSVLHDPIRVGTKGCGS. 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01988 534 ProSiteProfiles Zinc finger SWIM-type profile. 385 423 IPR007527 GO:0008270
Seca11g01988 534 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 52 514 IPR031052 GO:0006355
Seca11g01988 534 Pfam MULE transposase domain 144 237 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01988 Seca-Chr11 25206373 25208488 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g01988 MULE 2.4e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01988 - - tpra:123913749 361.688