Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01982 ATGGCTGACCCATCTTCCTCCTCCACCTCCTCTTCCTCCCAGTTCACATACTCCTCCAACGCCTCTTACTTCCCCATGCCCTTCCACCTCCAGCAACCCGCCACACAATACAACTACGCGGCGGCTCCACAACCGCCGGTTCAAGTCCCTCCCGGCCCATACCCATACCCGCCGTCGCAGCAGCTATTCCAGAAGGTAGCGCAGACGATCACGCCGGAAGCCCTAGAGAACGTGAAGGCGGCGATCGCCAACAGCGAGATCGAGCACAAGGCCGAGGCGAAGAAGAAGGCGGTTCCCCGGAAGGCCGCCGGCCAGTCATGGGAGGATCCTTCGCTAGCAGAGTGGCCGGAGAACGACCACCGTTTGTTCTGCGGCGATCTCGGGAACGAGGTGAACGACGACGTTTTGTCAAAGGCGTTCTCGCGGTTCCCTTCATTCAACATGGCCAGGGTTGTCAGGGACAAGCGCTCTGGAAAAACCAAAGGCTACGGATTCGTGAGCTTCGCAGATCCCTCGGATCTTGCCGTTGCGCTCAAAGAGATGAACGGAAAGTACGTTGGGAACCGACCTATCAAGCTTTGCAAAAGCAAGTGGAAGGAGAGAACGGATTACGACGCTTTGGGGAAGCAGAAGAAGCAATCTAAGAAGAAAATCAAATCTTCCAGGGTGGGTGTGTTGCATAACTGA 687 0.5648 MADPSSSSTSSSSQFTYSSNASYFPMPFHLQQPATQYNYAAAPQPPVQVPPGPYPYPPSQQLFQKVAQTITPEALENVKAAIANSEIEHKAEAKKKAVPRKAAGQSWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRSGKTKGYGFVSFADPSDLAVALKEMNGKYVGNRPIKLCKSKWKERTDYDALGKQKKQSKKKIKSSRVGVLHN. 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01982 228 MobiDBLite consensus disorder prediction 205 228 - -
Seca11g01982 228 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 192 IPR000504 GO:0003723
Seca11g01982 228 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Seca11g01982 228 MobiDBLite consensus disorder prediction 212 228 - -
Seca11g01982 228 MobiDBLite consensus disorder prediction 91 111 - -
Seca11g01982 228 SUPERFAMILY RNA-binding domain, RBD 104 202 IPR035979 GO:0003676
Seca11g01982 228 CDD RRM_RBM42 114 196 IPR034215 -
Seca11g01982 228 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 58 213 - -
Seca11g01982 228 FunFam RNA-binding protein 42 56 205 - -
Seca11g01982 228 Gene3D - 60 194 IPR012677 -
Seca11g01982 228 SMART rrm1_1 121 194 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01982 Seca-Chr11 25133822 25134508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01982 122 208 Eukaryotic Initiation Factors Gene Family AT1G71770 31.034 5.14e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01982 K25079 - egr:104415366 301.597