Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01980 ATGGAAATTATTTTTAAACACCAACTTAGCCTTGTTTGTGCTATACTACTCTTAGCTGTACTGTGTAACTCACAGGAATCTTTTACAGACTCCAGAGCAACATATTATGGTAGCCCTGATTGCTATGGGAATCCAAGAGGAGCTTGTGGCTTTGGTGAATATGGAAGAACAGTCAATGATGGTAGTGTCACAGGTGTGTCTAGGCTATGGAGGAATGGAAGTGGCTGTGGTGCATGTTATCAGGTTAGGTGCAAAATTCCACAATATTGTGATGAAAATGGAGCATATGTGGTGGTAACAGACTATGGTGAGGGAGACAGAACAGACTTTGTCATGAGTCCACGTGCCTACTCAAGATTGGGAAGCAATGCAGCTGCATCTGCAGAGTTGTTCAAATATGGTGTAGTTGATATTGAATACAGAAGGGTCCCTTGCAGATACACTGGCTATAACATAGTGGTCAGGGTCCATGAACACAGCAAAAACCCTGACTACTTTGCTGTTGTGGTTCTCTATGTAGATGGAACATTTGATGTCACTGCTGTTCAGATGTGGCAGGAAGATTGCCAAGAATGGAGGCCCCTGCGTAGGGCCTTTGGGGCAGTTTTTGACTTTGCCAACCCTCCAAGTGGTGAAATTTACTTGAGGTTCCAAGTGAGTGGCAATGCAGGGGTTTATTGGGTGCAGTCCAAGAATTCTATCCCTAGTGATTGGAGGGCTGGAGCTGCATATGACACCATGGTTCAGCTTAATTAG 756 0.4444 MEIIFKHQLSLVCAILLLAVLCNSQESFTDSRATYYGSPDCYGNPRGACGFGEYGRTVNDGSVTGVSRLWRNGSGCGACYQVRCKIPQYCDENGAYVVVTDYGEGDRTDFVMSPRAYSRLGSNAAASAELFKYGVVDIEYRRVPCRYTGYNIVVRVHEHSKNPDYFAVVVLYVDGTFDVTAVQMWQEDCQEWRPLRRAFGAVFDFANPPSGEIYLRFQVSGNAGVYWVQSKNSIPSDWRAGAAYDTMVQLN. 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01980 251 CDD DPBB_EXLB_N 29 145 - -
Seca11g01980 251 PANTHER EXPANSIN-B3 14 249 - -
Seca11g01980 251 SUPERFAMILY Barwin-like endoglucanases 13 149 IPR036908 -
Seca11g01980 251 Pfam Expansin C-terminal domain 152 235 IPR007117 -
Seca11g01980 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Seca11g01980 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Seca11g01980 251 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Seca11g01980 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Seca11g01980 251 SUPERFAMILY PHL pollen allergen 151 245 IPR036749 -
Seca11g01980 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Seca11g01980 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Seca11g01980 251 Pfam Lytic transglycolase 63 140 IPR009009 -
Seca11g01980 251 Gene3D - 19 145 IPR036908 -
Seca11g01980 251 Gene3D - 146 247 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01980 Seca-Chr11 25102662 25104521 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01980 9 250 Expansin Gene Family AT4G17030 59.259 5.82e-110 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01980 - - gmx:100779487 467.233