Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01979 ATGGCTCCATATTTATTATTTATCTCATTGGTCTCTGCAGTTCTTTCCTCTTTGGGCCTTAAACATGGGTTTCAAGCACCAACTTGGCCTTGTTTGTGTCATATACTCCTTCCTGTACTATGTAATTGCCAGCAATTTACTAAATCCAGAGCATCCTATTATGGCACCTCTGATGGTTATGGGAATCCAAGGGGAGCTTGTGGCTTTGGTGACTATGGAAGGACAGTCAATGATGGCAGTGTCACAGCTGTATCCGCTAAGCTATGGAAGAATGGAGCTGGTTGTGGTGGATGCTATCAAGTTAGGTGCAAAATACAAGAATTATGTAATGTCAATGGAGCAAATGTGGTAGTAACAGACTATGGTGAGGGAGACAGAACCGACTTCATCATGAGCCCACGCGGGTTCTCAAAATTGGGACTCAACCAAGATGCATCTGATAAGTTGAAGAAATATGGTGTAGTGGATGTTGAATACAGAAGGGTCCCTTGTACATTCAAGGGTTATAGCATTACGTTTCAAATCAATGAACATAGTAATAACCCTGGCTACTTTGCTATCGTGGTTCTCTATGTAGGTGGAACATACGATGTCACTGCTGTTGAGATGTGGCAGAAGGAACACTACAAATGGGAGGCCTTGCGTAGGACCAACGGGGCAGTGTTTGATTTTGCTAATCCACCAAAAGGTGAAATCCGCTTGAGGTTCCAAGTGAGCAACAGTGCAGGGCTTAAATGGGTGGAGCCCAACTTTACAATCCCTGCAAATTGGAAGGCTGGAGCAACTTATTCCTTCAATATTTAA 804 0.4341 MAPYLLFISLVSAVLSSLGLKHGFQAPTWPCLCHILLPVLCNCQQFTKSRASYYGTSDGYGNPRGACGFGDYGRTVNDGSVTAVSAKLWKNGAGCGGCYQVRCKIQELCNVNGANVVVTDYGEGDRTDFIMSPRGFSKLGLNQDASDKLKKYGVVDVEYRRVPCTFKGYSITFQINEHSNNPGYFAIVVLYVGGTYDVTAVEMWQKEHYKWEALRRTNGAVFDFANPPKGEIRLRFQVSNSAGLKWVEPNFTIPANWKAGATYSFNI. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01979 267 CDD DPBB_EXLB_N 47 164 - -
Seca11g01979 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 169 IPR007112 -
Seca11g01979 267 PRINTS Expansin/Lol pI family signature 251 265 IPR007118 GO:0005576
Seca11g01979 267 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576
Seca11g01979 267 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Seca11g01979 267 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Seca11g01979 267 PRINTS Expansin/Lol pI family signature 85 103 IPR007118 GO:0005576
Seca11g01979 267 SUPERFAMILY PHL pollen allergen 171 264 IPR036749 -
Seca11g01979 267 Gene3D - 165 265 IPR036749 -
Seca11g01979 267 SUPERFAMILY Barwin-like endoglucanases 31 168 IPR036908 -
Seca11g01979 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 183 265 IPR007117 -
Seca11g01979 267 PANTHER EXPANSIN-B3 36 264 - -
Seca11g01979 267 SMART dpbb_1 81 159 IPR007112 -
Seca11g01979 267 Gene3D - 39 164 IPR036908 -
Seca11g01979 267 Pfam Lytic transglycolase 82 159 IPR009009 -
Seca11g01979 267 Pfam Expansin C-terminal domain 171 248 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01979 Seca-Chr11 25087721 25090048 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01979 35 267 Expansin Gene Family AT4G17030 51.502 3.56e-89 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01979 - - psat:127074244 379.022