Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01978 ATGGGGATTGCTAGAGGACTACTTTACCTTCATCAAGATTCAAAACTAACCATCATTCATAGGGATCTGAAAACAAGTAATATTCTACTTGATAGTGAACTGAGCCTCAAAATTTCTTATTTTGGTGTGGCCTCTGCAGTAACAACAAATAAAATTGTTGCGACAATATAA 171 0.345 MGIARGLLYLHQDSKLTIIHRDLKTSNILLDSELSLKISYFGVASAVTTNKIVATI. 57
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01978 56 Pfam Protein kinase domain 3 51 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01978 56 Gene3D Transferase(Phosphotransferase) domain 1 1 56 - -
Seca11g01978 56 ProSitePatterns Serine/Threonine protein kinases active-site signature. 18 30 IPR008271 GO:0004672|GO:0006468
Seca11g01978 56 FunFam Os07g0541700 protein 1 55 - -
Seca11g01978 56 ProSiteProfiles Protein kinase domain profile. 1 56 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01978 56 SUPERFAMILY Protein kinase-like (PK-like) 2 51 IPR011009 -
Seca11g01978 56 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01978 Seca-Chr11 25086725 25086895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01978 2 54 Receptor kinase-like Gene Family AT4G23290 64.151 6.22e-18 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca11g01978 Pkinase 2.1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01978 - - gmx:102669607 85.1149