Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01977 ATGGAACTCAAACTTGGCCTCGTTTGTGTCATACTTCTCTTTCCTGTTCTGTGTAATGCCCAGGGATTTTTTACTAAATCCAGAACATCCTATTATGGCACCCCTGATGGCTTTGGCAATAAAAGGGGAGCTTGCGGCTTTGGCGATTATGGAAGCATGGTCAATGGTGGCAGTGTCGCAGCCGTGTCTGCTAAATTATGGAAGAATGGAGCTGGTTGTGGTGCATGCTATCAGGTTAGGTGCAAAATACCACAATTATGTGATATCAATGGAGCATATGTGGTGGTAACAGACTATGGTGAAGGAGACAGAACAGATTTCATCATGAGCCCACGCGGCTTCTCAAAATTGGGACTCAACCCAACTGCATCTGACAAGCTGAAGAAATATGGTGTATTGGATGTTGAATACAAAAGGGTTCCTTGCACATTCAAGGGCTATAACATCATGTTTCAAATCAATGAACATAGTAGTAACCCTGGTTACTTTGCTATTGCGGTTCTCTATGTTGGTGGAACATACGATGTCACTGCTGTTGAGTTGTGGCAGAGAGAACACCACCAATGGGAGCCCTTGCGTAGGTCTTATGGGGCAGTGTTTGACTTTGCTAACCCACCAAGAGGTGAAATCCGCTTGAGGTTCCAAGTGAGTACCAATGCAGGGCTTAAGTGGGTCGTGCCCAAGGTTCCAATCCCTGCGAATTGGAAGGCTGGAGCTACTTATACCACAAACATGGGTTTCAAGCATCAACTTGGCCTTGTTTGTGTCATACTACTCCTTCCTGTTCTATGTAATTGCCAGCAATTTACTAAATCCAGAGCATCCTATTATGGCACATCTGATGGTTATGGGAATCCAAGGGGAGCTTGTGGCTTTGGTGACTATGGAAGGACAGTCAATGATGGCAGTGTCACAGCTGTATCCGCTAAGCTATGGAAGAATGGAGCTGGTTGTGGTGGATGCTATCAAGTTAGGTGCAAAATTCCAGAATTATGTGATGTCAATGGAGCAAATGTGGTAGTATCAGACTATGGTGAGGGAGACAGAACCGACTTTATCATGAGCCCACGCGGGTTCTCAAAATTGGGACGCAACCAAGATGCATCTGACAAGTTGAAGAAATATGGTGTATTGGATGTTGAATACAGAAGGGTCCCTTGTACATTCAAGGGTTATAGCATTACGTTTCAAATCAATGAACACAGTAAAAACCCTGGCTACTTTGCTATTGTGGTTCTCTATGTAGGTGGAACATACGACGTCACTGCTGTTGAGATGTGGCAGAAGGAACACTACAAATGGGAGGCCTTGCGTAGGACCAACGGGGCAGTGTTTGATTTTGCTAATCCACCAAAAGGTGAAATCCGCTTGAGGTTCCAAGTGAGCAACAGTGCAGGGCTTAAATGGGTGGAGCCCAACTTTACAATCCCTGCAAATTGGAAGGCTGGAGCAACTTATTCCTTCAATATTTAA 1473 0.4487 MELKLGLVCVILLFPVLCNAQGFFTKSRTSYYGTPDGFGNKRGACGFGDYGSMVNGGSVAAVSAKLWKNGAGCGACYQVRCKIPQLCDINGAYVVVTDYGEGDRTDFIMSPRGFSKLGLNPTASDKLKKYGVLDVEYKRVPCTFKGYNIMFQINEHSSNPGYFAIAVLYVGGTYDVTAVELWQREHHQWEPLRRSYGAVFDFANPPRGEIRLRFQVSTNAGLKWVVPKVPIPANWKAGATYTTNMGFKHQLGLVCVILLLPVLCNCQQFTKSRASYYGTSDGYGNPRGACGFGDYGRTVNDGSVTAVSAKLWKNGAGCGGCYQVRCKIPELCDVNGANVVVSDYGEGDRTDFIMSPRGFSKLGRNQDASDKLKKYGVLDVEYRRVPCTFKGYSITFQINEHSKNPGYFAIVVLYVGGTYDVTAVEMWQKEHYKWEALRRTNGAVFDFANPPKGEIRLRFQVSNSAGLKWVEPNFTIPANWKAGATYSFNI. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01977 490 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 406 488 IPR007117 -
Seca11g01977 490 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 147 IPR007112 -
Seca11g01977 490 Pfam Expansin C-terminal domain 394 471 IPR007117 -
Seca11g01977 490 Pfam Expansin C-terminal domain 149 228 IPR007117 -
Seca11g01977 490 Pfam Lytic transglycolase 305 382 IPR009009 -
Seca11g01977 490 Pfam Lytic transglycolase 60 137 IPR009009 -
Seca11g01977 490 SUPERFAMILY PHL pollen allergen 394 487 IPR036749 -
Seca11g01977 490 SUPERFAMILY PHL pollen allergen 150 242 IPR036749 -
Seca11g01977 490 CDD DPBB_EXLB_N 270 387 - -
Seca11g01977 490 Gene3D - 16 142 IPR036908 -
Seca11g01977 490 Gene3D - 262 387 IPR036908 -
Seca11g01977 490 PANTHER EXPANSIN-B3 14 245 - -
Seca11g01977 490 SUPERFAMILY Barwin-like endoglucanases 255 391 IPR036908 -
Seca11g01977 490 SMART dpbb_1 304 382 IPR007112 -
Seca11g01977 490 SMART dpbb_1 59 137 IPR007112 -
Seca11g01977 490 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 287 392 IPR007112 -
Seca11g01977 490 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 243 IPR007117 -
Seca11g01977 490 Gene3D - 388 488 IPR036749 -
Seca11g01977 490 Gene3D - 143 244 IPR036749 -
Seca11g01977 490 CDD DPBB_EXLB_N 25 142 - -
Seca11g01977 490 SUPERFAMILY Barwin-like endoglucanases 10 146 IPR036908 -
Seca11g01977 490 PRINTS Expansin/Lol pI family signature 23 38 IPR007118 GO:0005576
Seca11g01977 490 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Seca11g01977 490 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Seca11g01977 490 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Seca11g01977 490 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Seca11g01977 490 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01977 Seca-Chr11 25055901 25063435 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01977 245 490 Expansin Gene Family AT4G17030 51.210 8.69e-89 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01977 - - psat:127074244 404.06