Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01974 ATGGAACTTAAACTTGGCCTCGTTTGTGTCATACTGCTCTTTCCTGTTTTGTGTAATGCCCAGGGATTTTTTACAAAATCTAGGGCATCCTATTATGGCACCCCTGATGGCTATGGGAATCCAATCAACGGTGGCAGTGTCACAGCCGTGTCTGCTAAGTTATGGAAAAATGGAGCTGGTTGTGGTGCTTGCTATCAAGTTAGGTGCAAAATACCACAATTATGTGATGTCAATGGAGCATATGTGGTGGTAACAGACTACGGTGAGGGAGACAGAACAGATTTCATCATGAGCCCACGTGGCTTCTCAAAATTGGGGCTCAACCCAGTTGCATCTGATAAGCTGAAAAAATATGGTGTATTGGATGTTGAATACAAAAGGGTCCCATGCACATTCAAGGGCTATAACATCATGTTTCAGATCAATGAACATAGTAATAACCCTGGTTACTTTGCTATTGCGGTTCTCTATGTAGGTGGAACATACGATGTCACTGCTGTTGAGATGTGGCAGAAAGAACGCCACCAATGGGAGCCCCTGCGCAGGTCCTATGGCGCAGTGTTTGACTTTGCAAACCCACCAAGAGGTGAAATTCTCTTGAGGTTCCAAGTGAGTAGCAATGCAGGACTTAATAAATGGGTGGTGTCTAAATTTCCAATTCCTGCAAATTGGAGGGCTGGAGCTACTTATACCACCAAACTCAAACTTGGTCTCGTTTGTGTCATACTTCTCTTTCCTGTTCTGTGTAACGCCCAGGGATTTTTTACAAAATCCAGGGCATCCTATTATGGCACCCCTGATGGCTATGGGAATCCAAGAGGAGCTTGTGGCTTTGGCGAATATGGAAGGACTGTCAATGGTGGCAGTGTCAGTGCCGTGTCTGCTAAGCTATGGAAGAATGGAGCTGGTTGTGGTGCATGCTATCAGGTTAGGTGCAAAATACCACAATTATGTGATGTAAATGGAGCATATGTGGTGGTGACAGATTATGGTGAGGGAGACAGAACAGATTTCATCATGAGCCCACGCGGCTTCTCAAAATTAGGACTCAACCCAACTGCATCTGACAAGCTGAAGAAATATGGTGTATTGGATGTTGAATACAAAAGGGTTCCTTGCACATTCAAGGGCTATAACATCATGTTTCAAATCAATGAACATAGTAGTAACCCTGGTAACTTTGCTATTGCGGTTCTCTATGTAGGTGGAACATACGATGTCACTGCTGTTGAGATGTGGCAGAAAGAACGCCACCAATGGGAGGCCCTGCGCAGGTCCTATGGCGCAGTGTTTGACTTTGCAAACCCACCAAGAGGTGAAATTCTCTTGAGGTTCCAAGTGAGTAGCAATGCAGGGCTTAAATGGGTGGTGCCCAAGGTTCCAATCCCCGCGAATTGGAAGGCTGGAGCTACTTATACCACAAGTATTTAA 1431 0.4514 MELKLGLVCVILLFPVLCNAQGFFTKSRASYYGTPDGYGNPINGGSVTAVSAKLWKNGAGCGACYQVRCKIPQLCDVNGAYVVVTDYGEGDRTDFIMSPRGFSKLGLNPVASDKLKKYGVLDVEYKRVPCTFKGYNIMFQINEHSNNPGYFAIAVLYVGGTYDVTAVEMWQKERHQWEPLRRSYGAVFDFANPPRGEILLRFQVSSNAGLNKWVVSKFPIPANWRAGATYTTKLKLGLVCVILLFPVLCNAQGFFTKSRASYYGTPDGYGNPRGACGFGEYGRTVNGGSVSAVSAKLWKNGAGCGACYQVRCKIPQLCDVNGAYVVVTDYGEGDRTDFIMSPRGFSKLGLNPTASDKLKKYGVLDVEYKRVPCTFKGYNIMFQINEHSSNPGNFAIAVLYVGGTYDVTAVEMWQKERHQWEALRRSYGAVFDFANPPRGEILLRFQVSSNAGLKWVVPKVPIPANWKAGATYTTSI. 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01974 476 CDD DPBB_EXLB_N 256 373 - -
Seca11g01974 476 Gene3D - 16 130 IPR036908 -
Seca11g01974 476 Gene3D - 247 373 IPR036908 -
Seca11g01974 476 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 273 378 IPR007112 -
Seca11g01974 476 Pfam Expansin C-terminal domain 380 459 IPR007117 -
Seca11g01974 476 Pfam Expansin C-terminal domain 137 218 IPR007117 -
Seca11g01974 476 Pfam Lytic transglycolase 291 368 IPR009009 -
Seca11g01974 476 Pfam Lytic transglycolase 48 125 IPR009009 -
Seca11g01974 476 PRINTS Expansin/Lol pI family signature 272 290 IPR007118 GO:0005576
Seca11g01974 476 PRINTS Expansin/Lol pI family signature 294 312 IPR007118 GO:0005576
Seca11g01974 476 PRINTS Expansin/Lol pI family signature 420 434 IPR007118 GO:0005576
Seca11g01974 476 PRINTS Expansin/Lol pI family signature 254 269 IPR007118 GO:0005576
Seca11g01974 476 PRINTS Expansin/Lol pI family signature 460 474 IPR007118 GO:0005576
Seca11g01974 476 PRINTS Expansin/Lol pI family signature 361 377 IPR007118 GO:0005576
Seca11g01974 476 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 149 232 IPR007117 -
Seca11g01974 476 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 27 135 IPR007112 -
Seca11g01974 476 Gene3D - 374 475 IPR036749 -
Seca11g01974 476 Gene3D - 131 233 IPR036749 -
Seca11g01974 476 SMART dpbb_1 290 368 IPR007112 -
Seca11g01974 476 SMART dpbb_1 47 125 IPR007112 -
Seca11g01974 476 PANTHER EXPANSIN-B3 249 475 - -
Seca11g01974 476 SUPERFAMILY PHL pollen allergen 136 231 IPR036749 -
Seca11g01974 476 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 392 474 IPR007117 -
Seca11g01974 476 SUPERFAMILY PHL pollen allergen 381 473 IPR036749 -
Seca11g01974 476 SUPERFAMILY Barwin-like endoglucanases 241 377 IPR036908 -
Seca11g01974 476 SUPERFAMILY Barwin-like endoglucanases 10 134 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01974 Seca-Chr11 24981394 24991612 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01974 230 476 Expansin Gene Family AT4G17030 52.227 4.80e-91 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01974 - - psat:127074244 404.831