Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01973 ATGGGACTTAGTTTCAAGCATCAACTTGGCCTTGTTTGTGTCATACTGCTCCTTCCTGCACTATGTAATTGCCAGCAATATACAAATTCCAGAGCATCCTATTATAGCACCCCTGATGGCTATGGGTATCCAAGGGGAGCTTGTGGCTTTCGTGACTATGGAAGGACGGTTAATGATGGTAGTGTCGCAACTGTGTCTGCTAAGCTATGGAATAATGGAGTTGGCTGTGGTGCATGCTATCAAGTTAGGTGCAAAATACCAGAATTATGCGATGTCAATGGAACATATGTAGTGGTAACAGACAACTATGGTCAGGGAGATGGAACAGACATCATTATGAGTCCACGAGGCTTCTCAAAATTGGGATGTAACCCAGCTGCAACTGACAAGTTGAAGAAATACAATGGAGTAGATATTGAATACAAAAGGGTCCCCTGTACATTCAAGGGCAATAACATTGTGTTTCAGATCAATGAACAGAGTAAAAAGCCTGGCTACTTCTCTATCACGGTTCTCTATGTAGGTGGAACATATGATGTTACTGCTATTGAGATGTGGCAGCAAGAACACAACAAATGGGAGCCTTTGCGAAGGACCAATGGGGCAGTGTTTGGCTTTGGTAACCCACCAAAAGGTGATATCCACTTGAGGTTCCAAGAGAGAAGGAGTACAGGGCTTAAATGGGTGAAGCTCATGTTTCCAGTTCCTGCAAATTGGAAGGTTGGAGATACTTTTTCCTTTAATATGTAA 750 0.4293 MGLSFKHQLGLVCVILLLPALCNCQQYTNSRASYYSTPDGYGYPRGACGFRDYGRTVNDGSVATVSAKLWNNGVGCGACYQVRCKIPELCDVNGTYVVVTDNYGQGDGTDIIMSPRGFSKLGCNPAATDKLKKYNGVDIEYKRVPCTFKGNNIVFQINEQSKKPGYFSITVLYVGGTYDVTAIEMWQQEHNKWEPLRRTNGAVFGFGNPPKGDIHLRFQERRSTGLKWVKLMFPVPANWKVGDTFSFNM. 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01973 249 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Seca11g01973 249 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Seca11g01973 249 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Seca11g01973 249 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Seca11g01973 249 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Seca11g01973 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 151 IPR007112 -
Seca11g01973 249 Pfam Lytic transglycolase 63 124 IPR009009 -
Seca11g01973 249 Gene3D - 19 146 IPR036908 -
Seca11g01973 249 Gene3D - 147 247 IPR036749 -
Seca11g01973 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 247 IPR007117 -
Seca11g01973 249 PANTHER EXPANSIN-B3 16 246 - -
Seca11g01973 249 Pfam Expansin C-terminal domain 153 228 IPR007117 -
Seca11g01973 249 SUPERFAMILY PHL pollen allergen 152 246 IPR036749 -
Seca11g01973 249 SUPERFAMILY Barwin-like endoglucanases 13 151 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01973 Seca-Chr11 24976621 24978313 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01973 9 249 Expansin Gene Family AT4G17030 46.888 1.95e-82 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01973 - - psat:127074244 353.984