LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g01973	ATGGGACTTAGTTTCAAGCATCAACTTGGCCTTGTTTGTGTCATACTGCTCCTTCCTGCACTATGTAATTGCCAGCAATATACAAATTCCAGAGCATCCTATTATAGCACCCCTGATGGCTATGGGTATCCAAGGGGAGCTTGTGGCTTTCGTGACTATGGAAGGACGGTTAATGATGGTAGTGTCGCAACTGTGTCTGCTAAGCTATGGAATAATGGAGTTGGCTGTGGTGCATGCTATCAAGTTAGGTGCAAAATACCAGAATTATGCGATGTCAATGGAACATATGTAGTGGTAACAGACAACTATGGTCAGGGAGATGGAACAGACATCATTATGAGTCCACGAGGCTTCTCAAAATTGGGATGTAACCCAGCTGCAACTGACAAGTTGAAGAAATACAATGGAGTAGATATTGAATACAAAAGGGTCCCCTGTACATTCAAGGGCAATAACATTGTGTTTCAGATCAATGAACAGAGTAAAAAGCCTGGCTACTTCTCTATCACGGTTCTCTATGTAGGTGGAACATATGATGTTACTGCTATTGAGATGTGGCAGCAAGAACACAACAAATGGGAGCCTTTGCGAAGGACCAATGGGGCAGTGTTTGGCTTTGGTAACCCACCAAAAGGTGATATCCACTTGAGGTTCCAAGAGAGAAGGAGTACAGGGCTTAAATGGGTGAAGCTCATGTTTCCAGTTCCTGCAAATTGGAAGGTTGGAGATACTTTTTCCTTTAATATGTAA	750	0.4293	MGLSFKHQLGLVCVILLLPALCNCQQYTNSRASYYSTPDGYGYPRGACGFRDYGRTVNDGSVATVSAKLWNNGVGCGACYQVRCKIPELCDVNGTYVVVTDNYGQGDGTDIIMSPRGFSKLGCNPAATDKLKKYNGVDIEYKRVPCTFKGNNIVFQINEQSKKPGYFSITVLYVGGTYDVTAIEMWQQEHNKWEPLRRTNGAVFGFGNPPKGDIHLRFQERRSTGLKWVKLMFPVPANWKVGDTFSFNM.	250

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g01973	249	PRINTS	Expansin/Lol pI family signature	66	84	IPR007118	GO:0005576
	Seca11g01973	249	PRINTS	Expansin/Lol pI family signature	26	41	IPR007118	GO:0005576
	Seca11g01973	249	PRINTS	Expansin/Lol pI family signature	44	62	IPR007118	GO:0005576
	Seca11g01973	249	PRINTS	Expansin/Lol pI family signature	134	150	IPR007118	GO:0005576
	Seca11g01973	249	PRINTS	Expansin/Lol pI family signature	233	247	IPR007118	GO:0005576
	Seca11g01973	249	ProSiteProfiles	Expansin, family-45 endoglucanase-like domain profile.	45	151	IPR007112	-
	Seca11g01973	249	Pfam	Lytic transglycolase	63	124	IPR009009	-
	Seca11g01973	249	Gene3D	-	19	146	IPR036908	-
	Seca11g01973	249	Gene3D	-	147	247	IPR036749	-
	Seca11g01973	249	ProSiteProfiles	Expansin, Cellulose-binding-like domain profile.	165	247	IPR007117	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g01973	Seca-Chr11	24976621	24978313	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g01973	9	249	Expansin Gene Family	AT4G17030	46.888	1.95e-82	245

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g01973	-		-	psat:127074244	353.984

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