Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01971 ATGGAACTTAAACTTGGTCTTGTTTGTGTCATACTTCTCTTTCCTGTTCTATGTAATGCCCAGGGATTTTTTACTAAATCCAGAGCATCCTATTATGGCACCCCTGATGGCTTTGGCAATAAAAGGGGAGCTTGCGGCTTTGGCGATTATGGAAGGACTGTCAATGGTGGCAGTGTCACAGCTGTGTCTGCTAAGCTATGGAAAAATGGAGCTGGTTGTGGTGCTTGCTATCAGGTTAGGTGTAAAATACCGCAATTATGCGATTTCAATGGAGCATATGTGGTGGTAACAGACTACGGTGAGGGAGACAGAACAGATTTCATCATGAGCCCACGTGGCTTCTCAAAATTGGGACGCAACCCAGTTGCATCTGATAAGCTGAAGAAATATGGTGTATTGGATGTTGAATACAAAAGGGTCCCCTGCACATTCAAGGGCTATAACATCATGTTTCAAATCAATGAACATAGTAATAACCCTGGTTACTTTGCTATTGCGGTTCTCTATGTAGGTGGAACAAACGATGTCACTGCTGTTGAGTTGTGGCAGAGAGAACACCGCAAATGGGAGCCCCTACGTAGGACCTATGGGGCAGTGTTTGACTTTGCTAACCCACCAAGAGGTGAAATCCGCTTGAGGTTCCAAGTGAGTAGCAATGCAGGACTTAAATGGGCGGTGCCCAAGATTCCAATCCCTGCGAATTGGAAGGCTGGAGCTACTTATACCACAAGTATTTAA 738 0.4499 MELKLGLVCVILLFPVLCNAQGFFTKSRASYYGTPDGFGNKRGACGFGDYGRTVNGGSVTAVSAKLWKNGAGCGACYQVRCKIPQLCDFNGAYVVVTDYGEGDRTDFIMSPRGFSKLGRNPVASDKLKKYGVLDVEYKRVPCTFKGYNIMFQINEHSNNPGYFAIAVLYVGGTNDVTAVELWQREHRKWEPLRRTYGAVFDFANPPRGEIRLRFQVSSNAGLKWAVPKIPIPANWKAGATYTTSI. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01971 245 Gene3D - 143 244 IPR036749 -
Seca11g01971 245 SUPERFAMILY Barwin-like endoglucanases 10 146 IPR036908 -
Seca11g01971 245 PANTHER EXPANSIN-B3 14 244 - -
Seca11g01971 245 Pfam Expansin C-terminal domain 149 225 IPR007117 -
Seca11g01971 245 SUPERFAMILY PHL pollen allergen 148 242 IPR036749 -
Seca11g01971 245 Gene3D - 16 142 IPR036908 -
Seca11g01971 245 Pfam Lytic transglycolase 60 137 IPR009009 -
Seca11g01971 245 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 243 IPR007117 -
Seca11g01971 245 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Seca11g01971 245 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Seca11g01971 245 PRINTS Expansin/Lol pI family signature 23 38 IPR007118 GO:0005576
Seca11g01971 245 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Seca11g01971 245 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Seca11g01971 245 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Seca11g01971 245 CDD DPBB_EXLB_N 25 142 - -
Seca11g01971 245 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 147 IPR007112 -
Seca11g01971 245 SMART dpbb_1 59 137 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01971 Seca-Chr11 24963744 24965442 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01971 3 245 Expansin Gene Family AT4G17030 53.086 1.06e-94 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01971 - - psat:127074244 400.593