Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01969 ATGGAACTTAGTTTTAAGCACCAATTTGGCCTTATTTGTGTCATACTGCTGTTTCCTGCACTTTGTAACTGCAAGGAATATTATACTAAATCTAGAGCAAGCTATTATGGCAGCCCTGATGGCTATTGGAATCCAAACTACGGTGAGGGAGATAGAACAGACTTCATCTTGAGTCCGCAAGCCTTCTCAAGATTGGGATATGCAAATCTGAGCAAATATGGTGTGGTGGATATTGAATACAAAAGGGTCCCCTGTACGTTTAGGGGCTATGACATCGTGTTTCAAGTCCATGAAAGCAGCAGAAACCCAGACTACTTTGCTATTGTGGTTCTCTATGTAGGTGGAACATATGAAGTCACTGGTGTTGAGATGTGGCAGAGAGATCACCACCAATGGGAGCCTCTGCGTAGGACTTATGGGGCAGTGTTTGACTTTGCTAATCCATCGAGAGATGAAATCCGCTTAAGCGTCACCGTCGAGCGACCAAGCAACCGTCTCCGTCCAGTTTCCAGTGCACCGTCCGCGTCGTACTCCATCTTCTCCGGCAATCGACGGCGTGCCCTGCCTCTACGTGAACCTGAGCAACCAAGTGATGCTGGAAGTGAACCTGAATCACCATTAAATGCTAGAGGATCATATGGTGGAAGCAACTTGAATAGCCAAAATAATATCTAG 675 0.4607 MELSFKHQFGLICVILLFPALCNCKEYYTKSRASYYGSPDGYWNPNYGEGDRTDFILSPQAFSRLGYANLSKYGVVDIEYKRVPCTFRGYDIVFQVHESSRNPDYFAIVVLYVGGTYEVTGVEMWQRDHHQWEPLRRTYGAVFDFANPSRDEIRLSVTVERPSNRLRPVSSAPSASYSIFSGNRRRALPLREPEQPSDAGSEPESPLNARGSYGGSNLNSQNNI. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01969 224 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 104 159 IPR007117 -
Seca11g01969 224 SUPERFAMILY Barwin-like endoglucanases 39 111 IPR036908 -
Seca11g01969 224 PANTHER EXPANSIN-B3 50 159 - -
Seca11g01969 224 Pfam Expansin C-terminal domain 92 160 IPR007117 -
Seca11g01969 224 SUPERFAMILY PHL pollen allergen 92 167 IPR036749 -
Seca11g01969 224 MobiDBLite consensus disorder prediction 210 224 - -
Seca11g01969 224 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 9 90 IPR007112 -
Seca11g01969 224 MobiDBLite consensus disorder prediction 183 224 - -
Seca11g01969 224 Gene3D - 84 177 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01969 Seca-Chr11 24935658 24940580 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01969 14 159 Expansin Gene Family AT4G17030 37.379 5.60e-37 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01969 - - psat:127074244 204.527