Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01968 ATGGGATTTAGTTTTAAGCACCAACTTGGCCTTGTTTGTGTCGTACTGCTCCTTCCTGCACTTTGTAACTGCAAGGAATATTTTACTCAATCCAGAGCATCCTATTATGGCAGCCCTGATGGCTATGGGCATCCAAATGAAGCTTGTGGATTTGGCGAGTATGGAAGGACAGTAAATGATGGCAAGGTCACAGATGTGTCGGCTAGGCTATGGAAAAATGGTGGTGGCTATGGTGAGGGAGATAGAACAGACTTTATCATGAGCCCACGTGGCTTCTCAGAATTGGGACGTAACAAAAATGCATCTGATGAGTTGTTCAAATACGGTGTAGTTGATGTTGAATACAAAAGGGTCCCTTGTACATTCAAGGGCAATGATAACATCATGTTTAAAATCAATGAACATAGTCAAAATCCTGGCTACTTCGCTATAGTGGTTCTCTATGTAGGAGGAACAAACGACATCACTACTGTTGAGATGTGGCAGAGAGATCACAACCAATGGGAGCCCCTGCGTAGGTCCTATGGTGCAGTGTTTGACTATGCTAACCCACCACGAGGAGCAATCCCCTTGAGGTTCAAATTGAGCAGTGCAAGACCTAAATTGTGTTCCTTGATCACTATCCCTGGTGATTGGAAGGCTGGGGCTACTTATACCGCCAAGATTCGACCTTGTTATTATTAG 684 0.443 MGFSFKHQLGLVCVVLLLPALCNCKEYFTQSRASYYGSPDGYGHPNEACGFGEYGRTVNDGKVTDVSARLWKNGGGYGEGDRTDFIMSPRGFSELGRNKNASDELFKYGVVDVEYKRVPCTFKGNDNIMFKINEHSQNPGYFAIVVLYVGGTNDITTVEMWQRDHNQWEPLRRSYGAVFDYANPPRGAIPLRFKLSSARPKLCSLITIPGDWKAGATYTAKIRPCYY. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01968 227 Gene3D - 119 221 IPR036749 -
Seca11g01968 227 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 11 125 IPR007112 -
Seca11g01968 227 Pfam Expansin C-terminal domain 128 197 IPR007117 -
Seca11g01968 227 PANTHER EXPANSIN-B3 80 222 - -
Seca11g01968 227 SUPERFAMILY Barwin-like endoglucanases 14 125 IPR036908 -
Seca11g01968 227 SUPERFAMILY PHL pollen allergen 127 219 IPR036749 -
Seca11g01968 227 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 140 220 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01968 Seca-Chr11 24927901 24929555 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01968 1 222 Expansin Gene Family AT4G17030 44.400 9.58e-66 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01968 - - psat:127074244 304.293