Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01967 ATGAGAACTTTTCGTACTCCCCCTCCATTTGATCCCCGATCAAGTCGCACATTTACTTATGGCAATACTTCAAGCTATTCTAATTACAATGGCGGTTTGCTCTCTCGGACGTTGGAGACGAAACATAGGATCAACGTTGGAGGCCAAACTGTGACAAGGGGCAACGGTAACTTGTTGAGAATTTGGCTTCCTGATTATAGTTTTCTCAGTAATCCGAGAAACGCGAAGAATAGTTCCCCGTACAATGCTGAAATTAAGTACAATGTCGGCGATGACCCTGATGGTCCAAATTCAAATCAATATACTGCGCCAAATGCTGTCTACCAAACTGCTAAAGAGATTAATAATAGCTATGTTGGTGCCTTAAACATAACTTGGGGTCTTCCTTTGGACAAGAATACAGATAATTTCTTGCGGTTTCACTTCTGTGACATCTTCAATCCACAAAATGGTATGACAATCTTCCATCTTTTCATTTACGACAGCCATGTTATAGATATAAATAATGACGGAGACCTTTCAAGCTTTTTGCCTAATCCTTATTATTATGACTTTGTTATTCACTCTGATGACTCTGGCCTCGTGAAGATCACCCTTAGTACTATGGATTCCCTAGAATCCAAATTCGTACTTAATGCATCTGTGCCTAACCCAAATGCATTTTTAAATGGGCTTGAAATAATGAAAGTGATTGGATCATCAGATTCTGTTCCTTTGGACCTGGAGGAATCTAAGCATAATCATTTACCTCTGGTGCTGGGTTCAGTTCTTGGACGTTTAGTACTGGTTTCAGTTGGGTTTCTTTGGCTTCACAAAATCATGAGTACTCCTAGGAGATTGACTGAGGGAACCATTCAAGGCTCCTTTCTAGCAAACATAAATCTTGGGCTGAAAATCTCCTTGCTTGATCTTCAATTGGCAGCAGAGAATTTTGATGCAAAGTGGATAATTGGCAGAGGTGGTTTTGGAAATGTCTATAAAGGAGTTCTAAAAAATGGCATGAAAGTGGCTGTGAAAAGAACTGAGCTAGGATCAGGTCAAGGCCTTCTAGAATTTCAAACAGAGATCAAGGTATTATCCAAGATTCATCACAAGCACCTTGTTTCCTTAATTGGGTATTGCAATGAAAGGAGTGAGATGATACTAGTTTATGAGTACATGGAGAAAGGGACACTAAGAGACCATTTATACAATACAAATTTGCCATGTTTGTCTTGGAAGCAGAGGCTGGAAATTTGCATTGGAGCTGCCAAAGGTCTTGATTACCTTCATAAAGGAGTAGCTGGAGGAATCATTCACCGTGATGTGAAATCCACCAACATATTGCTTGATGAGAACCTTGTGGCTAAAGTTGTTGACTTTGGCATTTCAAGGACAGGTTCTCTTGATCATCATCAACCATATGTCAGCACAGATGTTAAAGGCACTTTTGGGTATCTTGATCCTGAGTATTTTATGTCACAACAGCTGACAGAGAAATCTGATGTCTATTCATTTGGGGTTGTTCTTCTTGAAGTGTTATGTGCAAGACCAGCCATTGACCCATCGCTTCCAACGGAGCTGGTGAACTTGGCTGAGTGGGGAATGCTTTGCAAAAATAAGGGAATGCTTAAAGAGATCATCGATCCCTCCATCATGGGCCAAATTGATCGAAGCTCACTCATAAAATTTAGTGAAACAGTTGAAAAATGCTTACAAGAATATGGTTCTGATAGGCCAACAATGCGTGAAGTGTTGTGGGACTTGGAGGATGTGCTGCTGCTTCATCAAGGTGCAATACATAGAGAGCCACAAAATGATCAATCTAGCAATTCTGTGTCACTTCAGTTGTGTTGGGTTTCTCCTTAA 1848 0.4042 MRTFRTPPPFDPRSSRTFTYGNTSSYSNYNGGLLSRTLETKHRINVGGQTVTRGNGNLLRIWLPDYSFLSNPRNAKNSSPYNAEIKYNVGDDPDGPNSNQYTAPNAVYQTAKEINNSYVGALNITWGLPLDKNTDNFLRFHFCDIFNPQNGMTIFHLFIYDSHVIDINNDGDLSSFLPNPYYYDFVIHSDDSGLVKITLSTMDSLESKFVLNASVPNPNAFLNGLEIMKVIGSSDSVPLDLEESKHNHLPLVLGSVLGRLVLVSVGFLWLHKIMSTPRRLTEGTIQGSFLANINLGLKISLLDLQLAAENFDAKWIIGRGGFGNVYKGVLKNGMKVAVKRTELGSGQGLLEFQTEIKVLSKIHHKHLVSLIGYCNERSEMILVYEYMEKGTLRDHLYNTNLPCLSWKQRLEICIGAAKGLDYLHKGVAGGIIHRDVKSTNILLDENLVAKVVDFGISRTGSLDHHQPYVSTDVKGTFGYLDPEYFMSQQLTEKSDVYSFGVVLLEVLCARPAIDPSLPTELVNLAEWGMLCKNKGMLKEIIDPSIMGQIDRSSLIKFSETVEKCLQEYGSDRPTMREVLWDLEDVLLLHQGAIHREPQNDQSSNSVSLQLCWVSP. 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01967 615 Gene3D - 37 231 - -
Seca11g01967 615 Gene3D Phosphorylase Kinase; domain 1 278 386 - -
Seca11g01967 615 FunFam Receptor-like protein kinase FERONIA 387 604 - -
Seca11g01967 615 FunFam receptor-like protein kinase FERONIA 278 386 - -
Seca11g01967 615 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Seca11g01967 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Seca11g01967 615 PANTHER OS07G0166700 PROTEIN 298 588 IPR045272 GO:0004714|GO:0006468
Seca11g01967 615 Pfam Protein tyrosine and serine/threonine kinase 316 579 IPR001245 GO:0004672|GO:0006468
Seca11g01967 615 CDD STKc_IRAK 317 583 - -
Seca11g01967 615 SUPERFAMILY Protein kinase-like (PK-like) 299 583 IPR011009 -
Seca11g01967 615 Gene3D Transferase(Phosphotransferase) domain 1 387 606 - -
Seca11g01967 615 ProSiteProfiles Protein kinase domain profile. 311 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01967 615 MobiDBLite consensus disorder prediction 1 22 - -
Seca11g01967 615 SMART serkin_6 311 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01967 615 Pfam Malectin-like domain 35 230 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01967 Seca-Chr11 24880749 24883334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01967 36 603 Receptor kinase-like Gene Family AT2G23200 47.176 5.89e-167 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca11g01967 PK_Tyr_Ser-Thr 3.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01967 - - gmx:100305412 748.043