Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01965 ATGGAACTAAGTTTTAAGCACCAACTAGGCCTTGTTTGTGTCATACTACTCTTTCCTGCACTTTGTAACTGTCAGGAATATTTTACTGCATCCAGAGCAACCTATTATGCAGCCCCTGATGGCTCTGGGACTCCAAGGGGAGCTTGTGGCTTTGGTGATTGTGGAAAGACCTTGAATAATGGCAGTGTCACAGCTGTGTCTGCTAAGCTATGGAAGAGTGGAGGTGGTTGTGGTGCATGCTATCAGGTTAAGTGCAAAATACCACAATACTGTGACGACAATGGAGCAATTGTAGTAGTAACAGACCAAGGTGAAGGAGACAGAACAGACTTTATCGTGAGCCAACGTGGCTTCTCAAAATTGGGACGCGATTCAGCTGCATCTGAAGAGCTATTCAAATATGGTGTAGTGGATGTTGATTACAAAAGGGTCCCCTGTACATTCAAGAGTGATAGCATCATTGTGTTTCAGATCTATGAAAGCAGTAGCAACCCTGGCTACTTTTCTATAGTGATTCTCTATATTGGTGGAATATATGACCTCACTGCTGTTAAACTGTGGCAGAGCGATCACCACCAATGGGAGCCCCTGAACAGGTCTTATGGGGCAGTGTTTGACTTTTCTAACCCACCAAGAGGTGACATCCAATTGAGGTTTGAATTGAGCAGCAGTGCAGGGTTGATGCATGCCTCGTTCACAGTAGAGAGTAGTTGCCTACGAATTTATCATTTGGAAATGGATCTTAGTTTTAAGCACCAACTCGGGCTTGTTTGTGTGATACTACTCTTTCCTGCACTCTGTAACTGCCAGGAATATTTTACTCAATCCAGAGCATCCTTTTATGGCACCCCTGATGGCTATGGGAATCCAAGAGAATCTTGTGGCTTTGGAGACTACGGAAGGACAGTCAATGATGGCAGTGTTGCAGATGTGTCTGCTAGTTTATTTAGGAATGGAGTAGGTTGTGGTGCATGCTATCAGGTTAGGTGCAAAATAGCACAATTATGCGATCCCAATGGAGCAATTGTGGTGACAACAGGCAATGGTGAGGGATACAAAACAGACTTTATCATGAGTCCACGTGGCTTCTCAAGATTGGGACGTAACCCAAAGGCATCAGCAGAGTTGGTCAAATATGGTACCGTAGATGTTGAATATAAACGGGTCTCATGTACATTTAATGGTTATAACATTAAGTTTCAGATCCAAGAAAGTAGCAGCAATCCTGGCTACTTTGCTATCGTGATTATCTATGTTGGTGGAACATATGACATTAATGCTATTGAGATGTGGCAGAGAGAAAACCAATGGCAACCCTTGAATAGGAACCATGGGGCAGTGTTTGACTATTCTAACCCACCAAGAGGTGATATCCACCTGAGGTTCAAACTGAGTGGTTTTAAGTCAGCTTGGTTTTCCGTCCCTAGTAACTGGAAGGCTGGAGATACTTATAGCACAAGTATTCTGCCTAATTAG 1476 0.4356 MELSFKHQLGLVCVILLFPALCNCQEYFTASRATYYAAPDGSGTPRGACGFGDCGKTLNNGSVTAVSAKLWKSGGGCGACYQVKCKIPQYCDDNGAIVVVTDQGEGDRTDFIVSQRGFSKLGRDSAASEELFKYGVVDVDYKRVPCTFKSDSIIVFQIYESSSNPGYFSIVILYIGGIYDLTAVKLWQSDHHQWEPLNRSYGAVFDFSNPPRGDIQLRFELSSSAGLMHASFTVESSCLRIYHLEMDLSFKHQLGLVCVILLFPALCNCQEYFTQSRASFYGTPDGYGNPRESCGFGDYGRTVNDGSVADVSASLFRNGVGCGACYQVRCKIAQLCDPNGAIVVTTGNGEGYKTDFIMSPRGFSRLGRNPKASAELVKYGTVDVEYKRVSCTFNGYNIKFQIQESSSNPGYFAIVIIYVGGTYDINAIEMWQRENQWQPLNRNHGAVFDYSNPPRGDIHLRFKLSGFKSAWFSVPSNWKAGDTYSTSILPN. 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01965 491 PRINTS Expansin/Lol pI family signature 272 287 IPR007118 GO:0005576
Seca11g01965 491 PRINTS Expansin/Lol pI family signature 312 330 IPR007118 GO:0005576
Seca11g01965 491 PRINTS Expansin/Lol pI family signature 472 486 IPR007118 GO:0005576
Seca11g01965 491 PRINTS Expansin/Lol pI family signature 437 451 IPR007118 GO:0005576
Seca11g01965 491 PRINTS Expansin/Lol pI family signature 379 395 IPR007118 GO:0005576
Seca11g01965 491 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 291 396 IPR007112 -
Seca11g01965 491 SUPERFAMILY Barwin-like endoglucanases 15 149 IPR036908 -
Seca11g01965 491 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 410 486 IPR007117 -
Seca11g01965 491 Gene3D - 20 146 IPR036908 -
Seca11g01965 491 Gene3D - 265 391 IPR036908 -
Seca11g01965 491 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 151 IPR007112 -
Seca11g01965 491 PANTHER EXPANSIN-B3 262 487 - -
Seca11g01965 491 Gene3D - 147 236 IPR036749 -
Seca11g01965 491 Gene3D - 392 487 IPR036749 -
Seca11g01965 491 SMART dpbb_1 63 141 IPR007112 -
Seca11g01965 491 SMART dpbb_1 308 379 IPR007112 -
Seca11g01965 491 Pfam Expansin C-terminal domain 398 464 IPR007117 -
Seca11g01965 491 Pfam Expansin C-terminal domain 154 223 IPR007117 -
Seca11g01965 491 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 226 IPR007117 -
Seca11g01965 491 SUPERFAMILY Barwin-like endoglucanases 260 395 IPR036908 -
Seca11g01965 491 Pfam Lytic transglycolase 309 386 IPR009009 -
Seca11g01965 491 Pfam Lytic transglycolase 64 141 IPR009009 -
Seca11g01965 491 SUPERFAMILY PHL pollen allergen 397 485 IPR036749 -
Seca11g01965 491 SUPERFAMILY PHL pollen allergen 160 224 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01965 Seca-Chr11 24738644 24746871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01965 246 489 Expansin Gene Family AT4G17030 46.400 3.19e-73 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01965 - - psat:127074244 342.813