Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01960 ATGGGCAAACAAGGGCCTTGCTATCACTGTGGAGTTACAAGTACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCAGTACTATGCAATGCATGTGGATCTAGATGGAGGACAAAAGGAACACTTGCAAATTATACCCCTTTACATGCTCGGGCAGAAAATGTTGAGTATGAGGATCCAAAGGTGTCTAGGGTGAAGAGCATATCATTAAATAAGAACAAAGAAGTGAAATTGGTCAAGCGAAAACTGAACCATGATAATGCTGCATCTGGAGGGCTCACCCCTGATTATAATCAAGGATTCCAAAAGGTTTTAGATGAAGATACAAGCAATAGATCAAGTTCAGGGTCAGCCATATCTAACTCAGAGAGCTGTGCTCAATTTGGTGGTACAGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTGCCTTCTAAAAAGAGGACATGTGCTGGTCGTCCAAAGCATTCTTCTGTTGAGAAGCTCACAAAAGACTTATGTACTATTCTTCATGAACAACAGTCTTATTTTTCTGCTTCTTCTGAAGAGGATCTTCTTTTTGAAAGCGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTTATAAGGCATCCCAGCTCTATAGCTCGTGAAGAAGAGTCTGAGGCTAGTTCTCTTTCAGTTGATAATAAACAATGCCTGATGAGTGAGGCATATTCATGTTCTGGTACCATTCCTATGCATAGTGATTGCAGTGGCATGAATTTCTCATCCCAGGGAGTTGAAAAGGTCAGAAACTCCGTTGGCTATACAATGCCACAGGAGCAACTTGAAAGGCATGTTTTTGTACACCAGGACAAGTCTCAGCTTGAAAAACTAGAAGTTCTTGGAAATCATGATTCACCACTGTGCTCAATAGATTTGAATGATGTAGTGAACTATGAGGAGTTCTTGAGGAACTTGACAAATGAAGAGCAGCAGCAATTACTGAAGTATCTCCCTGTGGTTGATACTGCCAAACTTCCTGATAGCCTTAAAATGATGTTCGATAGCTGTCAATTCAAGGAGAACTTAACTTATTTTCAGCAACTTCTTGGGGAAGGTGTATTTGATTTCTCCTTGTTGGGGGCAAAACCTGAGGACTGCAAGATGTTGAAAAGGTTTGCATTGTCTGATCTGTCAAAGTCAAAATGGGTTGAGCACTACCATTTTCTCAAGATGCAGAGATATAGAAATAAGGCTGGAAAATGCGTTGATCAGGGATCTACTGCTGTGGCATCAAGCAGTGTTGCAAATTTCAAGAGATACCGTGACAGCCAAAATCAAAATTCACCAGAACTGAAGATAACAATGAGGAGCCCCAAAAGGTTGATCATAAAAACTGGCTATGAGGGCAAAGAAGTTGTAGAAGATGGCTCTAGCTTCAGCCCAAAAAGCCTATTTGCATTGCCTCGTGATGGTAGCTTGCGTGTGCTGGATTCTTTAAACTTTGTTGATGAGAGTTCTGATCAGGATCTGCTGCTAGAAGTGCCATCTAATAGTTCTTTTCCACAGGCAGAGCTCCTGCACCCTACTTTAAGCTCTGGTGCCCATGCCAGCACCAGTAGCAGCTCAGCATACTCACATGTTGCTCATCCTTAA 1647 0.425 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAENVEYEDPKVSRVKSISLNKNKEVKLVKRKLNHDNAASGGLTPDYNQGFQKVLDEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAQSVVWDAMVPSKKRTCAGRPKHSSVEKLTKDLCTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSILIRHPSSIAREEESEASSLSVDNKQCLMSEAYSCSGTIPMHSDCSGMNFSSQGVEKVRNSVGYTMPQEQLERHVFVHQDKSQLEKLEVLGNHDSPLCSIDLNDVVNYEEFLRNLTNEEQQQLLKYLPVVDTAKLPDSLKMMFDSCQFKENLTYFQQLLGEGVFDFSLLGAKPEDCKMLKRFALSDLSKSKWVEHYHFLKMQRYRNKAGKCVDQGSTAVASSSVANFKRYRDSQNQNSPELKITMRSPKRLIIKTGYEGKEVVEDGSSFSPKSLFALPRDGSLRVLDSLNFVDESSDQDLLLEVPSNSSFPQAELLHPTLSSGAHASTSSSSAYSHVAHP. 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01960 548 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Seca11g01960 548 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 301 413 IPR044867 -
Seca11g01960 548 Gene3D - 3 85 IPR013088 GO:0006355|GO:0008270
Seca11g01960 548 SMART GATA_3 1 60 IPR000679 GO:0006355|GO:0043565
Seca11g01960 548 Pfam Asx homology domain 289 373 IPR028020 -
Seca11g01960 548 CDD ZnF_GATA 6 55 IPR000679 GO:0006355|GO:0043565
Seca11g01960 548 PANTHER OSJNBB0038F03.10 PROTEIN 1 546 IPR044589 -
Seca11g01960 548 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Seca11g01960 548 Gene3D - 290 398 IPR038108 -
Seca11g01960 548 MobiDBLite consensus disorder prediction 529 548 - -
Seca11g01960 548 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Seca11g01960 548 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01960 Seca-Chr11 24512966 24518810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01960 1 525 C2C2-Gata Transcription Factor Family AT4G17570 52.700 7.48e-155 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca11g01960 ASXH 5.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01960 - - gmx:100799745 840.491