Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01945 ATGGGTGGAATTCTTTGTGACTGCTGCCTGAGGAATTTTTCAGTGTGGGAATTTGAGAAGCATGTTGGAAGTGATCTTGAACAACCCTATAAATGTATTTACCTTCATGAAAGACACATGTCCCTCCACGACCTCCAAATGATTGCCTTGCAAGATGCTAGCGAACGAAAACGACAGTGTGCATATTCATATGTATGTAACGAAAGTGCCCCAGATCAAAATGATGATGCATGTGCAATATGCGGAAATGGGGGAGACTTAGTATGTTGTGACATGTGTCCCTCTACGTATCATCCATCCTGTATACTGCAGATGGTTCCCGACAGTGATTGGTTATGTCCATATTGCTTATGCAAATATTGTGGGCTTGGTGAAGAGAGTAAAGAATTCATCACGTGCTTCCAATGTGATAAGAAGTTTCATCGGGGGTGCTTTGAACAATTTGAAAAAGAATTCTCAAAAAAGATCCTAGAACCTGAGTGTTCAAGATTATATTGTGGGCCGGACTGCAAAGATATATACGAGAAATTGGAGGGCTCACTTGGAGTTAAAAATGACATGATTAGAGGCTACTCTTGGAGAGTTATCCGCAAAATGGATATGACCTCTAATGCTAAGAGCCAAGATATAGAAAATAATTCAAAGGTTGCAGTTGCATGGATGTTAATGAATGAAGCTTTTGAGACAATAATCGACAAATGCACAGGCATCAATGTGCTTCAAAGTATAGTTTACAGTTGTGGATCAAACTTAACCAGGATTAATTTTAGTCGTTTCTATACATTTGTCATGGAGAAAGATGATGAAATAATTTGTGCAGCTACTATAAGATTACATGGGAGAGGGATTGCAGAAATGCCTTTTATTGCCACAGATAACGAGTACAGAGGACAAGGAATTTGCCAGTTATTAATGAGGGAAATTGAATCGTTCCTATGTAGCCTCAAAGTCAAAAGCTTGATCATTCCATCTGTTCCAAAGACTTCTAGGATGTGGAAGCGCAAGTACGGCTTCAAGGTGCTAAGTAAAGAGTTGAAGAGAGTAATATCCCCTTATAACGTTTTGATGTTCCATCATTCTATAATATTGTGCAAGGACTTGTCCACAAGCATATCAGGTGAATATCTCTCTTTTCTCTCATTTTCTTTCTCTCCTATATATGTCATTTTTTCTCTATTTCATTCAAGGTTCCCTTTTACAGACTTTCGCCATAGCAAGGAAGATAATCAAACTGATATTCAGAATGTCCATGAACCACAAGCAAGTCAAGCTAAGAAACCATTGGCTAGGCCCAGGAGGAACCAAATACACAAAAGGCAAAGAGACCAATAG 1332 0.3889 MGGILCDCCLRNFSVWEFEKHVGSDLEQPYKCIYLHERHMSLHDLQMIALQDASERKRQCAYSYVCNESAPDQNDDACAICGNGGDLVCCDMCPSTYHPSCILQMVPDSDWLCPYCLCKYCGLGEESKEFITCFQCDKKFHRGCFEQFEKEFSKKILEPECSRLYCGPDCKDIYEKLEGSLGVKNDMIRGYSWRVIRKMDMTSNAKSQDIENNSKVAVAWMLMNEAFETIIDKCTGINVLQSIVYSCGSNLTRINFSRFYTFVMEKDDEIICAATIRLHGRGIAEMPFIATDNEYRGQGICQLLMREIESFLCSLKVKSLIIPSVPKTSRMWKRKYGFKVLSKELKRVISPYNVLMFHHSIILCKDLSTSISGEYLSFLSFSFSPIYVIFSLFHSRFPFTDFRHSKEDNQTDIQNVHEPQASQAKKPLARPRRNQIHKRQRDQ. 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01945 443 SMART PHD_3 118 171 IPR001965 -
Seca11g01945 443 SMART PHD_3 77 117 IPR001965 -
Seca11g01945 443 Pfam Tify domain binding domain 3 47 IPR032308 -
Seca11g01945 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 128 IPR013083 -
Seca11g01945 443 SUPERFAMILY FYVE/PHD zinc finger 71 121 IPR011011 -
Seca11g01945 443 ProSiteProfiles Zinc finger PHD-type profile. 75 119 IPR019787 -
Seca11g01945 443 MobiDBLite consensus disorder prediction 410 443 - -
Seca11g01945 443 Gene3D - 196 347 - -
Seca11g01945 443 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 225 343 IPR016181 -
Seca11g01945 443 CDD NAT_SF 262 322 - -
Seca11g01945 443 Pfam Acetyltransferase (GNAT) domain 254 345 IPR000182 GO:0016747
Seca11g01945 443 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 221 361 IPR000182 GO:0016747
Seca11g01945 443 PANTHER PHD FINGER PROTEIN 12 3 411 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01945 Seca-Chr11 24151786 24154289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01945 3 367 PHD Transcription Factor Family AT4G14920 40.426 6.06e-87 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01945 - - lja:Lj0g3v0191649.2 466.077