Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01944 ATGTGCAGGATATTCAACTTTGACCTGCTCTGCCCCATGGATCAAGAAGGAATAGTGGCTCGTGGTGGGCCTTCAAATGATGTTGCTTCTGGCCATGAATGTGGTCAACCCACAGATCACACATCGACGAATACAAAAGATACCTTGGACAACCAACCCGAAGTTTGTGAACCAGCAGTTGGCATGTCATTTCATTCCATGGAAGCCGTTAAATCATTCTATCGACAATATGCTGTAAGAAAAGGGTTTAAGATCATTATAAGAAACTCAAGAAAAGGACCTGATAAAAAAATAAAATACTTCATCTTGGCATGTTCAAGACAAGGTAATTATGTTTCAATGGTACCTAAAGATTTGAAGACATTTCCGACAATAAGGAATAAATGTCCAGCAAAAATCACAGTGACATTGAAAGATGGACTTTGGCACATCAAGTCAGTTAATGCTGACCATTGTCATGACCTTAGCCCTGGTAATTCTAGGTTGCTTCATGGGAACAAAAACATGGGTATGCACATGAAGAGAACTATTCAGATAAATGATGAAGCAGGTGTGAGGTTGAACAAAAGCTACCATTCTGTTGTTTATGATGCGAGAGGATGTGAAAATATGTCATTACTTGAACAAGACATAAGAGACTTTGTAGGAAGGGAAGGTGATGACAATGACTGGTTGAGTGGCTTGTACAAAGAACGATCAAAATGGGTGCCATGTTTTTTAAGGCAAGATTTTTGGGCTGGAATGTCAACCACACATAGAAGTGAAAGTATCCATGCCTTTTTTGATGGATATGTAAATGCAACAACACTCCAACAGTTTGTAAGGCAATATGACAAGGCCCTCCAGGACAAAGCAGAAAAGGAATGTGAGGCTGATTTTCGATCATTCAACTCCACAATTCCTTGTGGGTCAAATTCCATGATTGAGCGGCAATTTCAAGCTGAATATACTCACATGAAATTTAATGAGGTTCAAGCTGAATTTCGAGCAAAAATGAATTGTTGTGTTAGTAGCATGTCTATGGATGGTTCCAAATGTACATATGATGTGATGGAGGAGACGATTGTTGTTGGGCATCCAAAAGAAGCCATTTTTCATGTGGTATTCAATCGTGATAATCATGATGTTAAGTGTAGTTGTTTACTATTCGAGTTTAAAGGCATAATGTGTAGACATTCACTTCTTGTCCTTGCTCAAGAAAGGGTGAAAGAAGTATCATCAAAGTATGTTTTGAACAGATGGAGCAAAAATAGACTGAAGTTGAGTCATCGGATGCCACAGATTTGTTCTACCATGGACCATGAGCTAGGCTTTCCGTGTGTTTGGATAAGACACTCTCTCGCTCGCATGCTATCGCTCACTGCTCTCCCTAAGGTGTTGTTTCTCTCTTCCTCTCTCACTCTTCTCCCTTCTGCTCTTCTCTTCAAGGTTCCTAGTGACTTGCATCCAGTTACAAATAAATCTGCCTTGTAG 1473 0.3985 MCRIFNFDLLCPMDQEGIVARGGPSNDVASGHECGQPTDHTSTNTKDTLDNQPEVCEPAVGMSFHSMEAVKSFYRQYAVRKGFKIIIRNSRKGPDKKIKYFILACSRQGNYVSMVPKDLKTFPTIRNKCPAKITVTLKDGLWHIKSVNADHCHDLSPGNSRLLHGNKNMGMHMKRTIQINDEAGVRLNKSYHSVVYDARGCENMSLLEQDIRDFVGREGDDNDWLSGLYKERSKWVPCFLRQDFWAGMSTTHRSESIHAFFDGYVNATTLQQFVRQYDKALQDKAEKECEADFRSFNSTIPCGSNSMIERQFQAEYTHMKFNEVQAEFRAKMNCCVSSMSMDGSKCTYDVMEETIVVGHPKEAIFHVVFNRDNHDVKCSCLLFEFKGIMCRHSLLVLAQERVKEVSSKYVLNRWSKNRLKLSHRMPQICSTMDHELGFPCVWIRHSLARMLSLTALPKVLFLSSSLTLLPSALLFKVPSDLHPVTNKSAL. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01944 490 Coils Coil 270 290 - -
Seca11g01944 490 MobiDBLite consensus disorder prediction 22 51 - -
Seca11g01944 490 ProSiteProfiles Zinc finger SWIM-type profile. 365 401 IPR007527 GO:0008270
Seca11g01944 490 SMART 26again6 376 403 IPR006564 GO:0008270
Seca11g01944 490 MobiDBLite consensus disorder prediction 31 51 - -
Seca11g01944 490 Pfam SWIM zinc finger 377 397 IPR007527 GO:0008270
Seca11g01944 490 Pfam FAR1 DNA-binding domain 72 156 IPR004330 -
Seca11g01944 490 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 50 170 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01944 Seca-Chr11 24090321 24096472 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g01944 FAR1 5e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01944 - - gmx:102667848 306.219