Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01943 ATGGCCGATGCTGTGGTTGCTTTCCTTCTACAAAACTTGTCCCAACTGCTGGCACACGAAGCTAAGTTGCTTTGTGGCGTGGAGGACAGAATCAGATCCCTCCACAATGAGCTTGAAATGATTATCGTGTTCCTCAAAGCCTCTGAAGGGAAGAAGAGCAAGAACGAGATGGAACAGAAAGTTGTCAGCCAAATCAGAGATATTGCACAAGTAGCTGAGGATGTCATTGACACATTTGTCACCAACGTTACCATTCACAAGAGAAGAAGCATGCTTGGGAAGATGCTCCATGGTGTTGACCACGCAAAGGTGCTCCATGACATAAATGATAAAATAGACAAGGTAAAGACCACCCTCAACGAGATACGTGAAAACAAGGCCAAATATGACTTCCCTGAAAGTGATCACTCCATGGCAAGAGAACAGGAGGAGAGGGTTCTATCACTTCACAAGCGAAGAAGAAACGTGGAAGAGGAAGATGTAGTAGGCTTTGTGCATGATTCCAAGGTAGTCATCAACAGACTCATAGAAGGGGATTCACGGGGCAAAGTCGTTTCTATCATTGGCATGGGTGGATTGGGTAAGACTACCCTTGCACGAAAGGTCTATAACAGCAACGAGGTGAAGCGATACTTCAATTGCCGTGCATGGGTTTATGTGTCAAACGAGTGTAGAGCTAAGGAACTTTTGCTTGGCCTTGTTAAGCATTTGATGCCAAATCCTGAATACTTTTCTATCTTGAGTGAGGATGAGCTGAAGAAGAAGGTGCAGGAATGCTTGAAGAGGAAAAGGTATCTCCTAGTCCTTGATGACTTGTGGAAAAAGCAAGATTGGGATGAGGTACAGGATGCTTTTCCTGATGACAATAGAGGCAGCAAAATATTGATTACTAGTCGTCTGAAAGAGGTAGCCTTGCATACCAGCCAAGACCCTCCTTACTGTCTTCAATTTCTCAGTGAAGAACAGAGTTGGGAGCTCTTCTCAAGAAAAGTGTTTAGGGGAGAAGAGTACCCTTCTGATCTAGAGCCTCTAGGCAAACAAATAGTTGAAAGTTGTCGCGGTTTGCCACTCTCAATTGTGGTGTTAGCAGGGCTTCTAGCAAACAAGGAAAGGTCACACAGAGAATGGTCCAAAGTGGTTGGCCATGTCAAATGGTATCTTACTCGTGATGAGACTCAAGTCAAGGATATAGTACTCAAACTCAGCTATGACAACTTGCCTAGAAGATTAAAGCCATGTTTTCTCTATCTTGGGATATTTCCTGAAGACTATGAAATCCACGTTAGGCAATTGCTGGAACGATGGGTTGCTGAAGGATTCATACAAGAATCAGGGAGTAGAGATCCAGATGATGTTGCTGAAGACTACTTGTATGAGCTCATTGATCGAAGTTTGATCCAAGTAGCACGAGTGAAGACTAGTGGTGGTGTGAAAACATGTCGCATCCATGATCTTCTTAGGGATCTCTGCATATCTGAGGGCAAAGAGGACAAGGTATTTGAAGTTTGCACTGATAATAACATTTTAATCCCAACAAAACCTCGTAGACTATCCATCCATTGTAGCATGCCTAGCTACATTTCTTCAAATAGCAATGACCATTCATGTGTCCGTTCTTTGTTTTGCTTTGATCCACACTACTATGTTGCTCCTAGTGAGTGGAAATGGCTTTCCAAAGGCTTCAAATTGGTTCGGGTGTTAGATCTTGTGGGGACGTGCTGCATAAAAATCCCTTCCAACTTGGCGGGCTTAATCCACTTAAGATACTTGAGAATAGACTCACAGTTTGTTAGAAGGATTCCAACTTCTATATGCACCCTTCAGAATCTACAAACCTTAGACTTGGGACCTTGTATCAGGATTATCTCGATTTCTTTTCCCAGTGGAATATGGAAGCTCAAGCATCTAAGGCATCTATATACACATGGGCCTATCATGCTCCGTAACCACCGTTCAGAATTAGATGGTGAAGTTATGTGGAATCTTCAAACCATCTCGTCCATTGCATTCAATAGACACACAACATCTCTCATACAGAAAGGAAGGTTCCCTAAACTAAGAAACTTGGGGTTGCATATCTCCTCTAACTGCGAGGAGCTTGAAGAAATTTTACAAAGCTTGGAGCACTTGAGTCATCTGAGTGTGTTAAAAATTGTCAGTTCCGAGGACCTTCCAACTTGTGCAGCCTCCTTTCCTCCAAACATTACCAAGTTAACATTGACAGGTATTAGCTGCTTGAATGAGAACTGGATGAATGCTTTGGGAAATCTCACCAAACTACGACAATTGAGCTTATCTGGAGGATCTGCAGATCCCTTTGAGTTTAATTTTGTTGCAGGCGGGTTCCCTCAACTGCAGGTGTTTAAGATGAGATTTTTGAAAGTCCAAAAGTGGAAATTAGCGAATGGTGCAATGCCACTTCTACAAAAGCTGGTCATTGACAGATGTCGTGGGGTGGTTAATTTCCTAAATGAACTTGGGTCTTTAACTACCTTGATAAAAGTGCAAGTTTGGGAATCCTCTAAAACAACGGCTCGAATGCTACGATATTTGGAAACAAAGAATGGGATTGAACTTGTAGTAGGATATTTGAGTTAA 2598 0.4261 MADAVVAFLLQNLSQLLAHEAKLLCGVEDRIRSLHNELEMIIVFLKASEGKKSKNEMEQKVVSQIRDIAQVAEDVIDTFVTNVTIHKRRSMLGKMLHGVDHAKVLHDINDKIDKVKTTLNEIRENKAKYDFPESDHSMAREQEERVLSLHKRRRNVEEEDVVGFVHDSKVVINRLIEGDSRGKVVSIIGMGGLGKTTLARKVYNSNEVKRYFNCRAWVYVSNECRAKELLLGLVKHLMPNPEYFSILSEDELKKKVQECLKRKRYLLVLDDLWKKQDWDEVQDAFPDDNRGSKILITSRLKEVALHTSQDPPYCLQFLSEEQSWELFSRKVFRGEEYPSDLEPLGKQIVESCRGLPLSIVVLAGLLANKERSHREWSKVVGHVKWYLTRDETQVKDIVLKLSYDNLPRRLKPCFLYLGIFPEDYEIHVRQLLERWVAEGFIQESGSRDPDDVAEDYLYELIDRSLIQVARVKTSGGVKTCRIHDLLRDLCISEGKEDKVFEVCTDNNILIPTKPRRLSIHCSMPSYISSNSNDHSCVRSLFCFDPHYYVAPSEWKWLSKGFKLVRVLDLVGTCCIKIPSNLAGLIHLRYLRIDSQFVRRIPTSICTLQNLQTLDLGPCIRIISISFPSGIWKLKHLRHLYTHGPIMLRNHRSELDGEVMWNLQTISSIAFNRHTTSLIQKGRFPKLRNLGLHISSNCEELEEILQSLEHLSHLSVLKIVSSEDLPTCAASFPPNITKLTLTGISCLNENWMNALGNLTKLRQLSLSGGSADPFEFNFVAGGFPQLQVFKMRFLKVQKWKLANGAMPLLQKLVIDRCRGVVNFLNELGSLTTLIKVQVWESSKTTARMLRYLETKNGIELVVGYLS. 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01943 865 Coils Coil 105 125 - -
Seca11g01943 865 Gene3D Ribonuclease Inhibitor 527 854 IPR032675 -
Seca11g01943 865 Gene3D - 317 402 IPR042197 -
Seca11g01943 865 Pfam NB-ARC domain 170 404 IPR002182 GO:0043531
Seca11g01943 865 Gene3D - 403 493 IPR036388 -
Seca11g01943 865 Gene3D - 5 118 - -
Seca11g01943 865 FunFam Probable disease resistance protein At5g66910 317 404 - -
Seca11g01943 865 CDD RX-CC_like 2 124 IPR038005 -
Seca11g01943 865 Pfam Rx N-terminal domain 5 89 IPR041118 -
Seca11g01943 865 PRINTS Disease resistance protein signature 605 621 - -
Seca11g01943 865 PRINTS Disease resistance protein signature 259 273 - -
Seca11g01943 865 PRINTS Disease resistance protein signature 184 199 - -
Seca11g01943 865 PRINTS Disease resistance protein signature 352 366 - -
Seca11g01943 865 PANTHER DISEASE RESISTANCE PROTEIN RP 49 816 IPR044974 GO:0006952
Seca11g01943 865 FunFam Probable disease resistance protein At1g61300 143 312 - -
Seca11g01943 865 Coils Coil 139 159 - -
Seca11g01943 865 FunFam Probable disease resistance protein At1g63360 403 492 - -
Seca11g01943 865 SUPERFAMILY L domain-like 481 837 - -
Seca11g01943 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 417 IPR027417 -
Seca11g01943 865 Gene3D - 141 310 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01943 Seca-Chr11 24082888 24085647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01943 183 489 WRKY Transcription Factor Family AT5G45050 24.516 4.22e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01943 - - mtr:25492796 1164.06