Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01938 ATGTACGGACAGAGTAATTACGAGGCCGATTTGGCCGTTTTGGACTCTATTCGTCGCCACTTGTTGGGCGAGTCCGAATTAAAATTCGGGGCTCCGACAACAAATTCGGGTAACTCCAAAGTTTACTCTCGGAGCTCCAGTTTCAGCAGCTTGTACCCGTGTTTAAGTGACAATTGGGGCGATTTACCACTCAAAGAAGACGATTCCGAAGACATGGTTCTCTACGGTGTGCTCCGTGACGCCGTTAACGTTGGGTGGGTCCCATCTCTCGATGCCGGGTCACCCGAAAGCGTCTCGTCGGGTTACCCGACGGAGATTAAGGTAAAACCCGAACCGGACGTCATGCCGCCGGAAAATAGAACCATTATGCTCGCGGCGGAGACGAAGGTGATCACGCCGGAGCAGCCGAAGGCTGCTCCGGCGAAGGGGAAGCACTACCGCGGCGTGAGACAACGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGAGACCCGGCGAAGAACGGGGCTCGGGTTTGGCTCGGAACTTTCGAGACCGCTGAGGATGCTGCTTTGGCTTACGATAGAGCTGCGTATAGGATGAGAGGTTCGAGAGCTTTGTTGAATTTTCCGCTTCGGGTTAACTCCGGTGAACCCGACCCGGTTAGAGTGACATCGAAAAGGTCTTCTTCGCCGGAAAGTGGATCATCGCCGGCGAAGAGGAAGAAGTTGGTGACAGCTGTTCAAGGAGGATTAAAAACGGGGCAAGTGGGAAGTCAAGTGGTGGCACAGTGTACACGTGGAGAGCAACTATTGGTTAGTTAA 801 0.5443 MYGQSNYEADLAVLDSIRRHLLGESELKFGAPTTNSGNSKVYSRSSSFSSLYPCLSDNWGDLPLKEDDSEDMVLYGVLRDAVNVGWVPSLDAGSPESVSSGYPTEIKVKPEPDVMPPENRTIMLAAETKVITPEQPKAAPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSSPESGSSPAKRKKLVTAVQGGLKTGQVGSQVVAQCTRGEQLLVS. 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01938 266 MobiDBLite consensus disorder prediction 214 229 - -
Seca11g01938 266 CDD AP2 144 203 IPR001471 GO:0003700|GO:0006355
Seca11g01938 266 Gene3D AP2/ERF domain 144 206 IPR036955 GO:0003700|GO:0006355
Seca11g01938 266 PANTHER DNA-BINDING DOMAIN 121 229 IPR044808 GO:0003700|GO:0009873
Seca11g01938 266 SMART rav1_2 145 209 IPR001471 GO:0003700|GO:0006355
Seca11g01938 266 PRINTS Ethylene responsive element binding protein signature 146 157 IPR001471 GO:0003700|GO:0006355
Seca11g01938 266 PRINTS Ethylene responsive element binding protein signature 169 185 IPR001471 GO:0003700|GO:0006355
Seca11g01938 266 ProSiteProfiles AP2/ERF domain profile. 145 203 IPR001471 GO:0003700|GO:0006355
Seca11g01938 266 MobiDBLite consensus disorder prediction 93 117 - -
Seca11g01938 266 FunFam Ethylene-responsive transcription factor 2 144 204 - -
Seca11g01938 266 MobiDBLite consensus disorder prediction 210 234 - -
Seca11g01938 266 Pfam AP2 domain 145 195 IPR001471 GO:0003700|GO:0006355
Seca11g01938 266 SUPERFAMILY DNA-binding domain 145 205 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01938 Seca-Chr11 23986688 23987488 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01938 1 265 AP2-EREBP Transcription Factor Family AT4G17500 53.986 4.65e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g01938 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01938 K09286 - gmx:100803653 344.739