Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01937 ATGGCTAACGCAGTTGAAGTTTCAGCTCTGAATCGTATTAAATTGCATCTTCTAGGTGAACTCTCTCCACTTGCTACTTCACCCCAAAACAAACAACCCTGGTTTCAACAACTTGATGGAGCAAACCCTAGCCCCTCTCAATCCAACTCTTCCACTTCTGAATCTTCAATTTCTTTGGATCATTACTTCACTGACCTTCTCGAATCGGAAACAGAGGTTCCCCTGTTTGAATTTGAGTTCAAACCCCAACCAATTGACCTCGATACACCAAAAGCCCTAACATCGAACCCTACACCTCAACAAACCCTCGAGAAGAAGCCTCAATTGAGCCGTAAACCGTCGCTGCAAATCTCTCTCCCCAAGAAAACCGAGTGGATCCAATTCGGAAACCCGGATCCGAACCCGGAGCCTCTCGTGCAGCAGAACCAACCCGAGCCTGTGGAGAAGAAGCACTACAGAGGAGTACGACAAAGGCCGTGGGGGAAATTCGCTGCAGAGATCCGAGATCCGAACAAGCGCGGGTCTAGGGTTTGGCTTGGAACGTTTGACACCGCCATCGAAGCTGCTAAAGCCTATGACAGAGCCGCGTTTAAGCTTCGTGGCTCCAAAGCTATTCTCAACTTCCCCTTGGAAGTTGCCGCCTCTGCAGAGGCGGTGGATTCCGGCGAGGGTGAGAGGAAACGCCCTCGTGAAGAGGAGGAGGTGGTGGAAGAAGTGAAAACGGTGGTGAAAAAGGAGAAAACGACGGAATTCGATGTGAACTGTTTTAAGGAGATTCCGTTAACGCCGTCTATTTGGACTGGGTTTTGGGACAATGATGTTAAGGGGATTTTCAACGTCCCGCCGTTGTCTCCGTTATCATCTCCCATTGCCGCTTTATGTTATTCACCGCTAATGGTTGTGTGA 906 0.4945 MANAVEVSALNRIKLHLLGELSPLATSPQNKQPWFQQLDGANPSPSQSNSSTSESSISLDHYFTDLLESETEVPLFEFEFKPQPIDLDTPKALTSNPTPQQTLEKKPQLSRKPSLQISLPKKTEWIQFGNPDPNPEPLVQQNQPEPVEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLEVAASAEAVDSGEGERKRPREEEEVVEEVKTVVKKEKTTEFDVNCFKEIPLTPSIWTGFWDNDVKGIFNVPPLSPLSSPIAALCYSPLMVV. 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01937 301 ProSiteProfiles AP2/ERF domain profile. 151 209 IPR001471 GO:0003700|GO:0006355
Seca11g01937 301 CDD AP2 150 209 IPR001471 GO:0003700|GO:0006355
Seca11g01937 301 SMART rav1_2 151 215 IPR001471 GO:0003700|GO:0006355
Seca11g01937 301 PANTHER DNA-BINDING DOMAIN 102 226 IPR044808 GO:0003700|GO:0009873
Seca11g01937 301 FunFam Ethylene-responsive transcription factor 2 150 211 - -
Seca11g01937 301 SUPERFAMILY DNA-binding domain 151 211 IPR016177 GO:0003677
Seca11g01937 301 PRINTS Ethylene responsive element binding protein signature 152 163 IPR001471 GO:0003700|GO:0006355
Seca11g01937 301 PRINTS Ethylene responsive element binding protein signature 191 211 IPR001471 GO:0003700|GO:0006355
Seca11g01937 301 Pfam AP2 domain 151 201 IPR001471 GO:0003700|GO:0006355
Seca11g01937 301 Gene3D AP2/ERF domain 150 212 IPR036955 GO:0003700|GO:0006355
Seca11g01937 301 MobiDBLite consensus disorder prediction 26 56 - -
Seca11g01937 301 MobiDBLite consensus disorder prediction 89 116 - -
Seca11g01937 301 MobiDBLite consensus disorder prediction 86 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01937 Seca-Chr11 23930453 23931358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01937 1 301 AP2-EREBP Transcription Factor Family AT5G47230 47.077 8.03e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca11g01937 AP2 3.7e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01937 K09286 - gmx:100800453 341.273