Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01930 ATGCATATAGAGGAATTGAAAGGAGGTGAGGTGGGGGAAGGTGGAGAGGAAGGGAGATCGAGCTTTGTTGGTTATGATACCAAGAGGGTTCTGGTTGGAGCAGGCGCTCGTGCCCTCTTCTATCCCACCCTGTTTTACAATGTCATTAGGAATAAGATTCAGGCTGAGTTTCGATGGTGGGATAAGGTTGATGAGGCTTCTCCCAATTCTGATGCACTTAATTTTCAGTTCATATTGTTAGGTGCTGTTCCATTTCCTATTGATGTTCCCCGCTTGAAGGAGCTTGGTGTCCGTGGGGTCATCACATTGAATGAGTCATACGAGACTTTGGTTCCAACCACATTATATTATGCTCATGGAATTGATCATCTGGTGATTCCTACTAGAGATTACTGTTTTGCTCCATCATTGCATAACATACACCGAGCTGTGGACTTTATACATGAAAATGCATTGTCTGGACGCACTACATATGTTCACTGCAAAGCTGGACGGGGTCGCAGCACAACTATTGTTATTTGTTATCTGGTGCACCACAAACTGATGACGCCTGATGCTGCATATGAATATGTGAAGTCAATTCGGCCAAGGGTGCTTCTAGCTTCCTCTCAGTGGCAAGCTGTCCAGGAATACTACCACCATCTTATGATGAGGAGGGCTGTTGGATGTGCTCCTACAGCCGATCTATTACTAAAGGCTTCTAGGGTTGCAGCAGCTTCACGAGATCTTGTAAAGTTTGATGATAGTTCTGTAGTCGTGGTAACTGAGCAAGATCTCGAAGGATACGACCCAAGTTGTCAATCAGGAACCATGACAAGTGAAATATGGGCAGATTTAAGCGTTGTTTACCGTGTGCGAGTTGCTGGACAGGCAGCATTGGCAAGAATATCATGCCTTTGGCTGCGATATGGTACCGACCAGAAGATTTCTGCGGAGAAACTGGGCAGGGAAAACAGTTGCTCAATGAGGACGAATCACTTGGGAGGAATTAGTGTTGATATCCACGTGTACTGA 1014 0.4546 MHIEELKGGEVGEGGEEGRSSFVGYDTKRVLVGAGARALFYPTLFYNVIRNKIQAEFRWWDKVDEASPNSDALNFQFILLGAVPFPIDVPRLKELGVRGVITLNESYETLVPTTLYYAHGIDHLVIPTRDYCFAPSLHNIHRAVDFIHENALSGRTTYVHCKAGRGRSTTIVICYLVHHKLMTPDAAYEYVKSIRPRVLLASSQWQAVQEYYHHLMMRRAVGCAPTADLLLKASRVAAASRDLVKFDDSSVVVVTEQDLEGYDPSCQSGTMTSEIWADLSVVYRVRVAGQAALARISCLWLRYGTDQKISAEKLGRENSCSMRTNHLGGISVDIHVY. 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01930 337 ProSitePatterns Tyrosine specific protein phosphatases active site. 159 169 IPR016130 GO:0016311|GO:0016791
Seca11g01930 337 Gene3D Protein tyrosine phosphatase superfamily 75 221 IPR029021 -
Seca11g01930 337 SMART dsp_5 68 214 IPR020422 GO:0006470|GO:0008138
Seca11g01930 337 ProSiteProfiles Dual specificity protein phosphatase domain profile. 67 217 IPR020422 GO:0006470|GO:0008138
Seca11g01930 337 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 306 - -
Seca11g01930 337 Pfam Dual specificity phosphatase, catalytic domain 93 212 IPR000340 GO:0008138|GO:0016311
Seca11g01930 337 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 77 216 IPR029021 -
Seca11g01930 337 CDD PTPMT1 59 212 IPR044596 GO:0004721
Seca11g01930 337 FunFam Dual specificity phosphatase domain protein 59 217 - -
Seca11g01930 337 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 138 206 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01930 Seca-Chr11 23832113 23836787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01930 19 337 Protein tyrosine phosphatase (PTP) family AT2G35680 58.410 1.29e-127 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01930 - - gmx:100790413 561.607