Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01924 ATGACCCGGCGATGCTCGCATTGCAGCCACAATGGCCACAACTCAAGGACCTGTCCCAATCGCGGGGTCAAGCTCTTCGGAGTCCGATTAACTGACGGGTCGATCCGAAAGAGCGCAAGTATGGGCAATCTCACTCATTATGCTGGTTCCGGGTCCGGACCCCTTCATGCCGGGTCTAATAACCCGGGTTCTCCTGGTGAAACACCTGATCACGCCGCCGCCGCTGACGGTTACGCTTCTGAGGATTTTGTTCCTGGTTCTTCTTCTAGTTCCCGTGAAAGAAAGAAGGGCGTTCCATGGACTGAGGAGGAACATAGAATGTTTTTACTTGGATTGCAGAAGCTGGGTAAAGGTGATTGGCGTGGAATTGCAAGGAACTATGTTATATCAAGGACTCCAACTCAAGTGGCCAGTCATGCTCAGAAATATTTCATCAGGCAAAGCAATGTGTCTAGGCGGAAAAGACGGTCCAGCTTGTTTGATATTGTTGCAGATGAAGTTTGTACCCTTGCATCTGACACTCCAATGGTACAGCAAGACTTCTTGTCAGCTAATCAGCTACCGGCCGAAACAGAAGGCAATAACCCCTTGCCTTCTCCTCCTCCCCTTGATGAAGAGTGTGAATCCATGGATTCTACTAACTCAAATGATGGAGAGCCTGCCCCATTAAAGCCTGATGACAACAACACACAACCTTCTTACCCAGTGTTATATCCTGCATATTATTCTCCATTCTTCCCATTTCCTCTTCCCTATTGGTCTGGATACAGTCCAGAGCCCACAAAGAAGGAGGAGACACATGAAGTGCTGAAGCCAACTGCAGTACATTCTAAAAGCCCAATCAATGTTGATGAACTGGTTGGCATGTCAAAACTGAGTTTAGGAGACTCTATTGGTGACTCTGGCCCCTCCTCTCTGTCTCGAAAACTCATCGAAGAAGGACCCTCTAGACAGTCAGCTTTTCATGCAACTCCAGCATGTGACAGTTCAAATATGAATGGCAGTATCATCCATACAGTTTAA 1023 0.477 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYAGSGSGPLHAGSNNPGSPGETPDHAAAADGYASEDFVPGSSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADEVCTLASDTPMVQQDFLSANQLPAETEGNNPLPSPPPLDEECESMDSTNSNDGEPAPLKPDDNNTQPSYPVLYPAYYSPFFPFPLPYWSGYSPEPTKKEETHEVLKPTAVHSKSPINVDELVGMSKLSLGDSIGDSGPSSLSRKLIEEGPSRQSAFHATPACDSSNMNGSIIHTV. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01924 340 SMART sant 96 146 IPR001005 -
Seca11g01924 340 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Seca11g01924 340 NCBIfam myb-like DNA-binding domain, SHAQKYF class 95 147 IPR006447 GO:0003677
Seca11g01924 340 ProSiteProfiles SANT domain profile. 100 148 IPR017884 -
Seca11g01924 340 Gene3D - 98 150 - -
Seca11g01924 340 MobiDBLite consensus disorder prediction 45 73 - -
Seca11g01924 340 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Seca11g01924 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
Seca11g01924 340 MobiDBLite consensus disorder prediction 1 21 - -
Seca11g01924 340 CDD SANT 99 144 IPR001005 -
Seca11g01924 340 SUPERFAMILY Homeodomain-like 94 149 IPR009057 -
Seca11g01924 340 PANTHER TRANSCRIPTION FACTOR KUA1 3 278 - -
Seca11g01924 340 MobiDBLite consensus disorder prediction 188 232 - -
Seca11g01924 340 MobiDBLite consensus disorder prediction 80 99 - -
Seca11g01924 340 FunFam transcription factor MYB1R1 98 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01924 Seca-Chr11 23670087 23673667 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca11g01924 Myb_DNA-binding 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01924 - - ccaj:109807943 607.06