Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01920 ATGGAGATGGAAGAAACTGTCCTTACAGACACTGAAATTCAACCAACCACTTCCTTGTCTTTCACCATTAATATTACATCCTCCACCTCTACCTCTTCTTCTTCCTCCACCACAGAAGAATCTACCAACAAACTCCACCAAGGCCAAGAATCAAGAAACAATAATGACAAAAAGAAGATGAAAAAGGTTGTGAACAAGGGAAGCAATGATGGGAAGCACCCAACATATAGAGGAGTGCGCATGCGTCAATGGGGAAAATGGGTATCAGAAATCAGAGAGCCAAGGAAGAAATCAAGAATTTGGCTTGGCACTTTCCCCACTGCTGAAATGGCAGCCAGAGCTCATGACGTGGCAGCTCTGACTATTAAAGGCAGTTCGGCTTATCTTAATTTTCCCGAGCTTACTGCAGAGCTGCCACGTCCAGCTAGCAATAGTCCTAAGGACATTCAAGTGGCCGCTGCTTTAGCGGCGACCACTGATTACCACATAAGCCATGAAGTAGACTTGGAAGCCGAGTCTGAGCTGAGCCAAGTAGAAGCTGAAGCAGTGTCTTCCTCATACTCAAGCCAAACTGAAGGATCATCATCATTGAAGGGTGAGGATGACATGTTTTTGGATCTTCCTGACTTGAATCATCATAGTGGTGATGGGTTTTATTACTCATCAGCTTGGCTTGTAGCTGGAGCTGAACAAATAGACTCTGGTTTTCGGCTTGAAGAGCCTTTTCTATGGGAGTCATATTAA 744 0.4462 MEMEETVLTDTEIQPTTSLSFTINITSSTSTSSSSSTTEESTNKLHQGQESRNNNDKKKMKKVVNKGSNDGKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALTIKGSSAYLNFPELTAELPRPASNSPKDIQVAAALAATTDYHISHEVDLEAESELSQVEAEAVSSSYSSQTEGSSSLKGEDDMFLDLPDLNHHSGDGFYYSSAWLVAGAEQIDSGFRLEEPFLWESY. 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01920 247 MobiDBLite consensus disorder prediction 180 200 - -
Seca11g01920 247 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Seca11g01920 247 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Seca11g01920 247 Gene3D AP2/ERF domain 75 133 IPR036955 GO:0003700|GO:0006355
Seca11g01920 247 MobiDBLite consensus disorder prediction 50 76 - -
Seca11g01920 247 MobiDBLite consensus disorder prediction 27 49 - -
Seca11g01920 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 42 214 - -
Seca11g01920 247 MobiDBLite consensus disorder prediction 27 76 - -
Seca11g01920 247 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Seca11g01920 247 SUPERFAMILY DNA-binding domain 75 133 IPR016177 GO:0003677
Seca11g01920 247 ProSiteProfiles AP2/ERF domain profile. 75 132 IPR001471 GO:0003700|GO:0006355
Seca11g01920 247 FunFam Ethylene-responsive transcription factor 2 74 133 - -
Seca11g01920 247 CDD AP2 76 134 IPR001471 GO:0003700|GO:0006355
Seca11g01920 247 MobiDBLite consensus disorder prediction 180 197 - -
Seca11g01920 247 SMART rav1_2 75 138 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01920 Seca-Chr11 23546500 23547243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01920 66 243 AP2-EREBP Transcription Factor Family AT2G44940 51.659 6.14e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g01920 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01920 - - gmx:100101914 265.388