Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01893 ATGTCCTCTCTTGATAGAAGACTGAGAGGCATTTTGATTTGTTTGAAAGAAAAGGTGAAAATGGTGGGGATGATGAGGAATTCTGGAATGATGGAAGATGTGGTCATAATTGGAGGGTTGATTGGAGTGCAATTTGTTTATGCAGGAAATGCTCTGCTGCTGAGTTATCTTATGTCTTTGGGCCTAACCTCTTTCACCATTGTCATTTTCACTTCCTTTGCTACATTCCTCATTGTCCTCCCTCTTGCCTTTTATTATGAAAGGTATAAATGGCCAAAGAAACTCAGTTTCAAGCTGGTTATGCAGTTTCTGTTCCTTTCATTTGGAGGTGTAACTTTGTTCCAGTCTTTATTCCTTAAAGGAATCAATCTAACCTCACCATCAATGGGAACTGCCATGCCAAACCTTGCCCCAGGCCTCATCTTCATCATAGCATGGATTTTTCGGTTGGAAAAAGTCAACTTAAGGTGCACATATAGTAGAGTAAAAATCATTGGTACATTGCTTTGTGTATTGGGGGCTTTCACAATGAGCATAATGCAAAGCATCTCTATAACTGCACCCTCTAAAGAAGCAACATTGCAATTATCATCTCCACCACCAGTTGTGATGTTTGACAGAGAGAAGATATTTGGTTGCCTCTATCTCTTGGCATCGATCTTCATATTATCAGGCAACGTTGTCTTGCAGGCTTTTACTCTAGGAGATTTTCCTGCACCAATGTCCTTGTGTGCAGTAACATCCTTTTTTGGGGGTTTCATTACTACAACAGCACAACTACTACAGGATCATGAATTCAAAACTGGTTGGCCATTACTGAGTATTGGAGACTTGATTGGCTATTCTCTTCTGGTAGGTGCAGTGAGTGGAATATGCTTAAGCTTCAATGGTTGGGCAATTGAGAAGAGAGGGCCAGTCTTGGTATCCATGTTCAGCCCCATCGCAACAGTGTGTTCTGTCATTTTCTCAGTTGTTACTCTAGGAGACACCATCAATATGGGAAGCTTTGTGGGTATGTTCCTCATGTTCGCTGGGCTTTATTTTGTGCTTTGGGCCAAAGGGAAAGAAGGATACACACATGGAATTGGCTTAGAGAGTGAGTTTGACATAGAGAAGCCTCTTTTAAGTTGA 1131 0.4129 MSSLDRRLRGILICLKEKVKMVGMMRNSGMMEDVVIIGGLIGVQFVYAGNALLLSYLMSLGLTSFTIVIFTSFATFLIVLPLAFYYERYKWPKKLSFKLVMQFLFLSFGGVTLFQSLFLKGINLTSPSMGTAMPNLAPGLIFIIAWIFRLEKVNLRCTYSRVKIIGTLLCVLGAFTMSIMQSISITAPSKEATLQLSSPPPVVMFDREKIFGCLYLLASIFILSGNVVLQAFTLGDFPAPMSLCAVTSFFGGFITTTAQLLQDHEFKTGWPLLSIGDLIGYSLLVGAVSGICLSFNGWAIEKRGPVLVSMFSPIATVCSVIFSVVTLGDTINMGSFVGMFLMFAGLYFVLWAKGKEGYTHGIGLESEFDIEKPLLS. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01893 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 274 354 - -
Seca11g01893 376 PANTHER WAT1-RELATED PROTEIN 39 357 IPR030184 GO:0016020|GO:0022857
Seca11g01893 376 Pfam EamA-like transporter family 41 178 IPR000620 GO:0016020
Seca11g01893 376 Pfam EamA-like transporter family 211 350 IPR000620 GO:0016020
Seca11g01893 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 79 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01893 Seca-Chr11 23111396 23115293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01893 9 360 Nodulin-like Gene Family AT5G47470 58.640 4.55e-146 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01893 - - gmx:100809182 568.54