Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01890 ATGGAAAGGCACAAATGCAAGCTATGTTCAAGGACATTTGCCAATGGCAGAGCCCTTGGTGGTCACATGAAGGCTCACCTTGCCACCCTTCCCCTGCCTCCAAAGCCTGAGGCTGAACCTTTCACTGAGTCTGTTTTCTTTTCATTCTCCTCTTCTGAATCAGAAGAAGAATCAGAGGAAAAGGCTCTGGTTTATGGGTTGAGGGAGAATCCCAAGAAAAGTTTCAGGCTTGCAGATCCTGAATTTTCTTTAGCACCTGATACTGGGTTTGTGGTCCAAGACAGAGAGAGTGAGACTGAGTCAAAGAACCCAACTCGCCAACGATCCAAGAGGAACAGAAAGTCTAGCTTAATGGGTAGCCAGAACCAGAATTTGGAATCCAAGAAACCCAAGTTGAGTTTCATGGTGTCAACACCACCATCCACAGAGCCAGAGCCTTTGAGTTCTGTTTCTGACACTTCCCCTGAAGAAGATGTTGCCATGTGCCTCATGATGCTGTCAAGGGACAAGTGGAGGAGGAAGAACAATGGTGTGGAAGTGGAACAACAAGGTTGTTGTCAGCAAGAAGAAGAACAAGGGGTGGAGAAAAATTCAAAGGGATGCAACAAAGAGATCAAGTTGAAGAGAGTTAGAGGGAAGCACTTGTGTGACAATTGTGGGAAAACTTTTAGATCTTCTAGAGCATTGGGAAGTCATAAAAGTGTTTGCTGTCAAAGAGGTGAAGGGAATGGCAATGACAAGATTTTTGAATGCCCTTTTTGTTTCAAGGTGTTTGGGTCAGGTCAAGCACTTGGTGGACACAAGAGATCTCACCTCATTCCTTCTTCATCATCAATAGCTAATGGTGATTCTGCTAGATTGAAAGAAAGCTTCATAGATCTCAACTTGCCAGCTCCACTTGAAGAAGATGACCTCAGTGTTGTTTCTGATGCGTAA 936 0.4455 MERHKCKLCSRTFANGRALGGHMKAHLATLPLPPKPEAEPFTESVFFSFSSSESEEESEEKALVYGLRENPKKSFRLADPEFSLAPDTGFVVQDRESETESKNPTRQRSKRNRKSSLMGSQNQNLESKKPKLSFMVSTPPSTEPEPLSSVSDTSPEEDVAMCLMMLSRDKWRRKNNGVEVEQQGCCQQEEEQGVEKNSKGCNKEIKLKRVRGKHLCDNCGKTFRSSRALGSHKSVCCQRGEGNGNDKIFECPFCFKVFGSGQALGGHKRSHLIPSSSSIANGDSARLKESFIDLNLPAPLEEDDLSVVSDA. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01890 311 SUPERFAMILY beta-beta-alpha zinc fingers 214 271 IPR036236 -
Seca11g01890 311 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 311 IPR044303 GO:0006355
Seca11g01890 311 MobiDBLite consensus disorder prediction 114 155 - -
Seca11g01890 311 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Seca11g01890 311 Pfam C2H2-type zinc finger 214 233 - -
Seca11g01890 311 Pfam C2H2-type zinc finger 249 272 - -
Seca11g01890 311 Pfam C2H2-type zinc finger 3 28 - -
Seca11g01890 311 ProSitePatterns Zinc finger C2H2 type domain signature. 251 271 IPR013087 -
Seca11g01890 311 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Seca11g01890 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 243 IPR013087 -
Seca11g01890 311 SMART c2h2final6 214 234 IPR013087 -
Seca11g01890 311 SMART c2h2final6 249 271 IPR013087 -
Seca11g01890 311 SMART c2h2final6 4 26 IPR013087 -
Seca11g01890 311 MobiDBLite consensus disorder prediction 86 155 - -
Seca11g01890 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 249 271 IPR013087 -
Seca11g01890 311 Gene3D Classic Zinc Finger 211 271 - -
Seca11g01890 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01890 Seca-Chr11 23067521 23068456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01890 1 308 C2H2 Transcription Factor Family AT3G60580 37.160 1.02e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca11g01890 zf-C2H2_6 1.6e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01890 - - gmx:100815124 391.349