Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01882 ATGGCTCCTCTCTTCTTCATCTCGCTGCAATTAATTTCCACTTGCATATTACATGCAGCCACTGTGACATGCACGACCTACCACGACAGCACCCCCAAAATAGTCTCTTCCACAAACACATCCAAATTACACAATCTCCGTTGGGTTGGACCCATTGGACACCGAGTAATCACCGTCGACATCAATGGCGGTGGCCATTTCCGTTCCGTTCAAGCCGCCGTCAATGTCGTCCCTGACAACAATAGAATGAATGTCCTTATTCAAATTAGCGCCGGATGCTACATAGAGAAGGTGATGGTGCCGGTGAGTAAACCGTACATAACGTTTCAAGGGGCGGGAAGGGAAGTGACGGTTATAGAATGGCATGATCGAGCGAGTGACCCTGGTCCTAACGGACAACAGCTGCGTACTTACAGAACTGCTTCTGTAACTGTTTTTGCCAACTATTTCTCTGCTAGGAATATCACCTTCGAGAATACAGCGCCAGCACCAATGCCGGGAATGCAGGGATGGCAAGCGGCGGCGTTTCGGATATCAGGAGACAAAGCTTACTTCTCTGGCTGCGGATTCTACGGTGCACAAGACACTCTTTGTGACGACGCTGGCCGCCATTATTTCAAGGAATGTTACATTCAGGGTTCCATAGATTTCATTTTTGGGAATGGAAGGTCCATGTACAAGGATTGCGAGCTACACTCAATTGCCACAAGGTTCGGGTCAATAGCAGCCCAAGATAGGAAATCCCCGTACGAAAAGACGGGCTTCGCATTCGTAAGGTGCAAGGTGACCGGAACAGGCCCACTTTATGTGGGCCGTGCAATGGGCCAGTACTCTAGGATTGTCTATGCCTATACCTACTTCGACGACATTGTTGCACATGGTGGTTGGGATGACTGGAACAGTGCCAACAACAAAAACAATACGTGGAGTCTCTTTGGCCCAAGAGCTAGATTTCGAATCAGCCCATCCATTCTTAGTCAAGAGTTTTGTCAATGGGAAACACTGGATTGCACCCTCTGA 1020 0.4873 MAPLFFISLQLISTCILHAATVTCTTYHDSTPKIVSSTNTSKLHNLRWVGPIGHRVITVDINGGGHFRSVQAAVNVVPDNNRMNVLIQISAGCYIEKVMVPVSKPYITFQGAGREVTVIEWHDRASDPGPNGQQLRTYRTASVTVFANYFSARNITFENTAPAPMPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIQGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRKSPYEKTGFAFVRCKVTGTGPLYVGRAMGQYSRIVYAYTYFDDIVAHGGWDDWNSANNKNNTWSLFGPRARFRISPSILSQEFCQWETLDCTL. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01882 339 FunFam Pectinesterase 52 317 - -
Seca11g01882 339 ProSitePatterns Pectinesterase signature 2. 211 220 IPR033131 -
Seca11g01882 339 SUPERFAMILY Pectin lyase-like 54 309 IPR011050 -
Seca11g01882 339 Pfam Pectinesterase 57 303 IPR000070 GO:0030599|GO:0042545
Seca11g01882 339 Gene3D - 53 319 IPR012334 -
Seca11g01882 339 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 53 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01882 Seca-Chr11 22977553 22986855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01882 4 316 Carbohydrate Esterase AT5G47500 67.925 8.72e-160 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01882 - - gmx:100796327 546.969