Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01828 ATGGATTTGAAGTCCTCTCATGCTTCTCCTATTCTTACTGATCCTGTTCCCATCAACAAGTCAAGGCTTGGAATCCGTTCTAATCTGCTAGCTTGTTCCCAGCAAGATTCATCACTCTCTCCAGCAAAGTACACAAAAAGCAATTCAAGGAAAAGTACAGGGAGTCTTGATGATGTTAGGCATAATGGTTGGTTGGATGCCATGAAGGCCTCTTCACCTCCAAGGAAGAAGCTACTTAAAGGTTCCAGTGCTCAGGTTGCTTCAATTGATTATGACATTGAAGACTATAATTCATGGACACTGGGATATCCTTCAGCACTAGACTCTTTTGAGGAAATTATTGACCGTGCAAAGAATAAGAAGATTGCAATGTTTCTAGATTATGATGGCACACTTTCTCCAATAGTAGATGATCCAGATTGTGCCTTTATGTCTGAATCTATGCGTGCAACTGTGAGAAAAGTAGCAAAGTATTTCCCTACAGCAATCATCAGTGGAAGAAGCCGTGACAAGGTTTTTGATTTAGTTAAACTGACAGAACTCTACTATGCTGGTAGTCATGGGATGGACATTATTGGCCCTGTTAATGACACTCTGTCCAAAGTCCATCCAAATTGTGCCAAGTCTACCGACCATCAGGGAAAGGAGATAACTCTCTTTCAACCTGCAAGTGAATTCCTCCCTATGATTGATGAGGTTTTTAGAACCCTCATCGAGATTACTAGAGATATAAAAGGCGCAAAAGTTGAAAATCACAAGTTTTGCGTTTCTGTACATTATCGTAATGTAGAAGAGAATAATTGGACAACGATTGGTCAACGTGTCCATGATATCTTAAAAAATTACCCTCGTTTATGTTCAACTCATGGGCGGAAGGTTTTAGAAATTCGTCCTGTAATAGACTGGAACAAAGGAAAAGCTGTTGAATTTTTACTTGAATCTTTAGGGTTAACAGATAGGAATGATGTTCTTCCCATCTACATTGGAGATGATAAAACTGATGAAGATGCATTTAAGGTGTTGCGGGAGAAGAATCAAGGTTATGGCATTTTGGTTTCATCAGTGAGAAAAGAAAGCAATGCCTTCTACTCTCTGCGAGATCCCACTGAGGTTCAAATCCCAATATAG 1128 0.3972 MDLKSSHASPILTDPVPINKSRLGIRSNLLACSQQDSSLSPAKYTKSNSRKSTGSLDDVRHNGWLDAMKASSPPRKKLLKGSSAQVASIDYDIEDYNSWTLGYPSALDSFEEIIDRAKNKKIAMFLDYDGTLSPIVDDPDCAFMSESMRATVRKVAKYFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPVNDTLSKVHPNCAKSTDHQGKEITLFQPASEFLPMIDEVFRTLIEITRDIKGAKVENHKFCVSVHYRNVEENNWTTIGQRVHDILKNYPRLCSTHGRKVLEIRPVIDWNKGKAVEFLLESLGLTDRNDVLPIYIGDDKTDEDAFKVLREKNQGYGILVSSVRKESNAFYSLRDPTEVQIPI. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01828 375 FunFam Trehalose 6-phosphate phosphatase 229 373 - -
Seca11g01828 375 NCBIfam trehalose-phosphatase 120 371 IPR003337 GO:0003824|GO:0005992
Seca11g01828 375 FunFam Trehalose 6-phosphate phosphatase 223 299 - -
Seca11g01828 375 SUPERFAMILY HAD-like 123 371 IPR036412 -
Seca11g01828 375 Gene3D - 122 213 IPR023214 -
Seca11g01828 375 Gene3D - 222 373 IPR023214 -
Seca11g01828 375 CDD HAD_TPP 123 371 - -
Seca11g01828 375 NCBIfam HAD-IIB family hydrolase 124 342 IPR006379 -
Seca11g01828 375 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 42 372 IPR044651 GO:0004805|GO:0005992
Seca11g01828 375 Pfam Trehalose-phosphatase 125 368 IPR003337 GO:0003824|GO:0005992
Seca11g01828 375 FunFam Trehalose 6-phosphate phosphatase 122 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01828 Seca-Chr11 22032221 22038036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01828 118 371 Trehalose Biosynthesis Gene Families AT1G70290 26.022 1.83e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01828 K01087 - tcc:18606311 550.821