Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01816 ATGTCATCATCCTCTTCAACTACATTATCACTGGACCACCTCCCTCCTTCCGAGCAACTTTGTTATGTCCACTGCAATATTTGTGACACCATCCTCGCTGTAAGTGTTCCCTGCACAAGCTTGTTCAAGACAGTTACTGTCCGATGTGGCCATTGCACTAACCTCCTTCCTGGTTTGCTTCTTCCATCGCCCAATCAATTTCATTTGGGCCACTCTTTCTTCTCCCCGCCTCATAACCTTCTGGAGGAGATGCCAAACCAATCTCAAAATTTTCTTATGAACCACACAAATGCATCATCAAATGACTTTTCCATGCCTGCTAGGACTGCTGTAGCTGCAGATCATGAGCTTCCACGCCCACCTACCATAAATAGACGTGAGATTCATTTCAAATCTAACTTCTTTTCTTTCATATATATATGGCTGAAGCTGTGA 435 0.4391 MSSSSSTTLSLDHLPPSEQLCYVHCNICDTILAVSVPCTSLFKTVTVRCGHCTNLLPGLLLPSPNQFHLGHSFFSPPHNLLEEMPNQSQNFLMNHTNASSNDFSMPARTAVAADHELPRPPTINRREIHFKSNFFSFIYIWLKL. 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01816 144 PANTHER PROTEIN YABBY 6-RELATED 1 125 IPR006780 GO:0007275
Seca11g01816 144 Pfam YABBY protein 16 80 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01816 Seca-Chr11 21881850 21882763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01816 17 55 C2C2-YABBY Transcription Factor Family AT2G26580 74.359 3.19e-16 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Seca11g01816 YABBY 3.7e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01816 K25796 - cave:132165312 184.496