Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01814 ATGAACACATTTTCACATGTACCTCCAGGCTTTCGGTTTCATCCAACTGATGAAGAACTTGTTGATTACTACCTTAGGAAAAAGGTAGCATCTAAAAGGATTGATCTTGATGTCATCAAAGATGTCGATCTCTATAAGATTGAACCATGGGATCTTCAAGAATTATGCAAAATTGGAACGGATGAACAAAGTGACTGGTATTTCTTTAGTCACAAAGACAAAAAGTATCCAACTGGAACTCGCACCAATAGAGCAACAAAAGCAGGATTCTGGAAAGCCACAGGAAGAGATAAGGCAATATACTCTAAGCACAACCTCATTGGTATGAGAAAGACTCTTGTGTTTTACAAAGGAAGAGCACCAAATGGACAGAAGTCTGATTGGATCATGCATGAGTACCGCCTTGAAACTAATGAAAATGGAACCACTCCGGAAGAAGGGTGGGTTGTATGTAGAGTGTTCAAGAAGCGAATGACCACAATGCAGAAAGTGGAGTATGAGTCACCTTGTTGGTATGAAGACCAAGTTTCCTTCATGCAACAAGATCTTGAATCCCCAAGGCGGAACAATATTTCTCATCACCCTTATGCATCATCCTACCACCCATGCAAACCAGAGCTTGAATTAATTCAATACAACAACATTCCCCATGATGCTTCTTTCCTCCAACTTCCACAACTAGAAAGCCCAAAAGTCACTCAATCAGCAGCCAGTTCTGTTATTCCTTACGGTTATGCAAGTAACAACAATAACGGAACCACCTTGCAGTTCTCATCGTCAGTTACTCAAGAAGAACAGATCCAAAACTTCCACCAACAAACTCTGCACTCTCTTTATGGTGCTAGCAATGATCAAGTGGTTGACCAAGTAACGGATTGGAGAGTGCTTGACAAATTTGTTGCTTCTCAGCTCAGTCATGAACAAGACGTTTCGAAGGAAACTGGTAGTTATTCTGATGCAGCGTCTATTCTCCATGTGGCTGAACAACTTACTGTGCTAGCAAATGGATCCAAGATGGCGCAAATTTCACAGGAAAATGCTTCAACATCTACCTCCAGCTGCCAGATTAACCTGTGGAAGTGA 1083 0.4146 MNTFSHVPPGFRFHPTDEELVDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHNLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTTPEEGWVVCRVFKKRMTTMQKVEYESPCWYEDQVSFMQQDLESPRRNNISHHPYASSYHPCKPELELIQYNNIPHDASFLQLPQLESPKVTQSAASSVIPYGYASNNNNGTTLQFSSSVTQEEQIQNFHQQTLHSLYGASNDQVVDQVTDWRVLDKFVASQLSHEQDVSKETGSYSDAASILHVAEQLTVLANGSKMAQISQENASTSTSSCQINLWK. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01814 360 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Seca11g01814 360 FunFam NAC domain-containing protein 16 160 - -
Seca11g01814 360 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Seca11g01814 360 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Seca11g01814 360 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 264 - -
Seca11g01814 360 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01814 Seca-Chr11 21828666 21833275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01814 1 360 NAC Transcription Factor Family AT1G12260 55.703 4.16e-139 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca11g01814 NAM 8.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01814 - - gmx:100783529 571.237