LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g01805	ATGGCAGAAAGACTACTCAGCCTTTCTTTTCTGGTCCTGAGCCTTGTCCTTTACATGGCTGCTAGCACTGCAGAATCCGCAGTTGCAAGAAGACCCAACCCCAACCCAATAGACTTCATAAAATCCTCATGCAGGGCCACACTCTACCCTGCTGTGTGCGTTCAAAGCCTCATGGGTTATGCAAACGTGATTCGCCAAGACGAGCATCAACTAGCCATCACAGCCTTGAATGTGAGCGTATGGAGGACTCGTTCAAGTGCATCATTTATGAAGAAAATGAGCAAGGTAAAGGGGATTAAGCCTAGGGATTACGGTGCTGTACAAGACTGCAAAGAGAACATGGATAATAGTGTGGACCGTCTTAACCAATCGGTTAAGGAGCTTGGGCTTACGGGTAAGGCCTTGGGCCAGGACCCAATGTGGCACATGAGTAACGTTCAGACTTGGGTCAGTGCTGCTCTAACGGATCAGAACACGTGTCTTGATGGGTTTGCCAGTCCTCACGTGGATAGAAAGTTGAAGGCTACCATTAGTGCCAGGGTTGTTGATGTTTCTCAAGTCACTAGTAATGCTCTTGCATTGGTTAATCGCTTTGCCTCCAGGTACCGTACTGCTGCACACAACTGA	627	0.4833	MAERLLSLSFLVLSLVLYMAASTAESAVARRPNPNPIDFIKSSCRATLYPAVCVQSLMGYANVIRQDEHQLAITALNVSVWRTRSSASFMKKMSKVKGIKPRDYGAVQDCKENMDNSVDRLNQSVKELGLTGKALGQDPMWHMSNVQTWVSAALTDQNTCLDGFASPHVDRKLKATISARVVDVSQVTSNALALVNRFASRYRTAAHN.	209

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g01805	208	Gene3D	Invertase/pectin methylesterase inhibitor family protein	37	198	IPR035513	-
	Seca11g01805	208	Pfam	Plant invertase/pectin methylesterase inhibitor	38	194	IPR006501	GO:0004857
	Seca11g01805	208	CDD	PMEI-like_3	42	200	-	-
	Seca11g01805	208	PANTHER	PECTINESTERASE INHIBITOR-LIKE	6	194	-	-
	Seca11g01805	208	NCBIfam	pectinesterase inhibitor domain	7	196	IPR006501	GO:0004857
	Seca11g01805	208	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	38	198	IPR035513	-
	Seca11g01805	208	SMART	PMEI_2	35	194	IPR006501	GO:0004857
	Seca11g01805	208	FunFam	Pectin methylesterase inhibitor 1	35	198	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g01805	Seca-Chr11	21710756	21711382	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g01805	19	195	Carbohydrate Esterase	AT3G14310	28.333	1.06e-22	93.6

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g01805	-		-	gmx:100789460	253.062

Showing 1 to 1 of 1 entries