Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01796 ATGGGTTCTCAGCAGAACGATGGCACAAGCTACCCACCATCGGAGCCCAAGCCCTGCGCCAACAACTGCGGCTTCTTCGGCACCGCCGGGAACCAGAACCTCTGTTCCAAATGCTACAGAGACTTGTCCATTCAAGAAGTGCATGCCGCTACTGCAAAAGCCGCCATGGAGAAATCCCTGCTCCTCCCCGCCGCCGCCATAACCGCCTCTCCGGCCGTTCTTGTAGCGGAGCCTTCATCTTCCGCTGAGCCGTCTGCTGCGCCGGCGAAGGCGGCCAATCGGTGCGGCAGTTGTAACAAGAAAGTGGGGTTGACAGGGTTCGTGTGCAAGTGTGGGACCACCTTCTGTGGGACCCATCGTTATCCTGAGAAGCATCAGTGCTCGTATGACTTCAAGACTGCCGGGCGTGATGTGATTTCCAAGGCCAATCCCATAATAAAGGCCGACAAAATTCAAAGGTTCTAG 465 0.5656 MGSQQNDGTSYPPSEPKPCANNCGFFGTAGNQNLCSKCYRDLSIQEVHAATAKAAMEKSLLLPAAAITASPAVLVAEPSSSAEPSAAPAKAANRCGSCNKKVGLTGFVCKCGTTFCGTHRYPEKHQCSYDFKTAGRDVISKANPIIKADKIQRF. 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01796 154 ProSiteProfiles Zinc finger A20-type profile. 13 47 IPR002653 GO:0003677|GO:0008270
Seca11g01796 154 FunFam Zinc finger AN1-type containing 6 70 150 - -
Seca11g01796 154 ProSiteProfiles Zinc finger AN1-type profile. 89 135 IPR000058 GO:0008270
Seca11g01796 154 SMART A20_3 16 40 IPR002653 GO:0003677|GO:0008270
Seca11g01796 154 Gene3D - 69 150 IPR035896 -
Seca11g01796 154 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 19 61 - -
Seca11g01796 154 Pfam AN1-like Zinc finger 95 131 IPR000058 GO:0008270
Seca11g01796 154 Pfam A20-like zinc finger 18 40 IPR002653 GO:0003677|GO:0008270
Seca11g01796 154 SUPERFAMILY AN1-like Zinc finger 80 149 IPR035896 -
Seca11g01796 154 Gene3D - 2 60 - -
Seca11g01796 154 PANTHER AN1-TYPE ZINC FINGER PROTEIN 16 153 - -
Seca11g01796 154 SMART AN1_Zf_4 95 132 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01796 Seca-Chr11 21534411 21534875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01796 13 154 C2H2 Transcription Factor Family AT3G52800 40.373 1.27e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01796 - - zju:107403429 206.068