Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01795 ATGGATCCAATTACATCACATGGTACTCATTCTCTACCACCTCCCTTCCACACAACAAGAGATCTCCATCTACACCACCAGCAGCAGACTCCCCATCAATTTCACACCACTTTACACCAAACCGCAGAAGACGACGAGCAAAGCGGAAGCACCGGAGGCCTAAACAAACGGGAACGACAAGAAACCACCAACGAGCCCAACAACGCAACAACAGGCTCAGGCGGTGAAGGTGAGATAACAAGAAGACCAAGAGGAAGACCAGCGGGCTCAAAGAACAAGCCCAAACCACCCATCATCATCACTCGTGACAGCCCAAACTCCCTTAGAACCCACATGATGGAGGTAGCAGACGGTTGTGACATCGTCGAAAGTGTTTCCAACTTCGCTAGAAGGCGTCAGAGAGGGGTCTGCATCATGAGCGGAACTGGAACCGTCACCAACGTCACTCTCAGGCAACCAGCCTCTGCCGGTGCTGTTGTTACTCTTCAAGGAAGGTTCGAGATCTTGTCTCTTTCCGGTTCGTTTCTTCCACCGCCGGCTCCGCCGCCGGCGTCGGGTTTGACCATATATTTGGCCGGTGGTCAGGGGCAAGTGGTAGGAGGAAGTGTGGTTGGGACGCTGGTTGCTTCAGGGCCTGTGATGATTATGGCTGCTTCGTTTAGTAACGCTGCTTATGAGAGACTTCCTTTGGAAGAAGAAGAAGGTTCGATGGCATTGCAAGGAGGTTCAATTGGATCGCCAGGTGCAAGTGGAGTTGGTGGTCAACAATCACAGGTTTTAGGAGATGCAACAACTACAACTGCTCCACTCTTCCATGGCTTGCCTCAGAATCTTCTCAATTCTATTCAGATGCCTTCTGAGGCTTTTTGGGCTAATGCTCCTCGCCCTCCTCCATATTGA 900 0.5144 MDPITSHGTHSLPPPFHTTRDLHLHHQQQTPHQFHTTLHQTAEDDEQSGSTGGLNKRERQETTNEPNNATTGSGGEGEITRRPRGRPAGSKNKPKPPIIITRDSPNSLRTHMMEVADGCDIVESVSNFARRRQRGVCIMSGTGTVTNVTLRQPASAGAVVTLQGRFEILSLSGSFLPPPAPPPASGLTIYLAGGQGQVVGGSVVGTLVASGPVMIMAASFSNAAYERLPLEEEEGSMALQGGSIGSPGASGVGGQQSQVLGDATTTTAPLFHGLPQNLLNSIQMPSEAFWANAPRPPPY. 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01795 299 CDD DUF296 109 176 IPR005175 -
Seca11g01795 299 ProSiteProfiles PPC domain profile profile. 105 242 IPR005175 -
Seca11g01795 299 Gene3D - 108 240 - -
Seca11g01795 299 MobiDBLite consensus disorder prediction 236 257 - -
Seca11g01795 299 FunFam AT-hook motif nuclear-localized protein 108 235 - -
Seca11g01795 299 PIRSF ESCAROLA 21 297 IPR014476 GO:0003680
Seca11g01795 299 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 43 292 IPR014476 GO:0003680
Seca11g01795 299 MobiDBLite consensus disorder prediction 1 107 - -
Seca11g01795 299 Pfam Plants and Prokaryotes Conserved (PCC) domain 109 222 IPR005175 -
Seca11g01795 299 SUPERFAMILY AF0104/ALDC/Ptd012-like 105 234 - -
Seca11g01795 299 MobiDBLite consensus disorder prediction 29 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01795 Seca-Chr11 21513154 21514053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01795 1 290 AT-hook Motif Nuclear Localized (AHL) Family AT3G60870 53.378 1.30e-81 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01795 - - pop:7478098 352.058