Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01791 ATGGAGGCTAGTGGCGGTGTTAGTGGTGGCGTTACGGTGGTGGGATCGGATGCTCCGTCGGAGTACCATGTAGCTCCGAGGAACGACAACTCAACTCCGACCGGTGGATCGACGACACAGATTTCAACAGTGCCGGCGGCGAACCAGGGGAATGCTCCGCCGCCGTCAGTGCCGCCGCATACGGCGGCGACGACAGTGTCTCCGGCAGGTTCAACGATTCCGGGGAAGAAGAAGAGAGGTCGGCCAAGAAAGTATGCACCGGACGGGTCGGTGACCATGGCGCTGTCTCCTAAACCGATTTCTTCTTCTGCTCCGTTGCCGCCGGTGATCGATTTCTCGGCGGAGAAGCGCGGAAAAGTGAAGCCAGCTAGCTCGGTGAGCAAAACCAAGTTTGAGGTTGAGAATTTAGCTCTTTTAGGTGAATGGGTCGCATGTTCAGTTGGTGCTAATTTTACACCCCACATCATCACTGTTAATTCTGGGGAGGACGTTACTATGAAGGTAATATCTTTTTCTCAGCAAGGGCCTCGAGCTATATGCATTCTTTCAGCAAATGGTGTGATATCAAGTGTCACACTTCGTCAGCCTGATTCTTCTGGGGGCACATTGACATATGAGGGACGGTTTGAAATTCTGTCTTTATCTGGTTCATTCATGCCAAATGAAAGTGGAGGAACACGAAGCAGATCAGGTGGCATGAGTGTCTCTTTAGCAAGTCCTGATGGACGTGTTGTAGGTGGAGGAGTTGCTGGTCTGTTGGTAGCTGCAAGTCCTGTGCAAGTAGTGGTAGGGAGTTTTCTGGCAGGAAACCAACATGAGCAGAAGACAAAAAAACCAAAACATGATGTTATATCAACTGTGACACCTGCTGCAGTTGTTCCCATCACTACTCTTGATCCTGTACCTATTCTATCATCAGCAACTTCCTTCCGCGGAGATAATTGGTCTGCTATGCCAGCTGATGACAAGAATAAGCCAGCTGACATAAACGTGTCACTTCCTGGAGGCTAA 1011 0.5035 MEASGGVSGGVTVVGSDAPSEYHVAPRNDNSTPTGGSTTQISTVPAANQGNAPPPSVPPHTAATTVSPAGSTIPGKKKRGRPRKYAPDGSVTMALSPKPISSSAPLPPVIDFSAEKRGKVKPASSVSKTKFEVENLALLGEWVACSVGANFTPHIITVNSGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKTKKPKHDVISTVTPAAVVPITTLDPVPILSSATSFRGDNWSAMPADDKNKPADINVSLPGG. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01791 336 ProSiteProfiles PPC domain profile profile. 148 290 IPR005175 -
Seca11g01791 336 CDD DUF296 152 243 IPR005175 -
Seca11g01791 336 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 48 294 IPR039605 GO:0003680
Seca11g01791 336 Gene3D - 153 285 - -
Seca11g01791 336 FunFam AT-hook motif nuclear-localized protein 1-like 153 283 - -
Seca11g01791 336 MobiDBLite consensus disorder prediction 25 50 - -
Seca11g01791 336 MobiDBLite consensus disorder prediction 1 107 - -
Seca11g01791 336 Pfam Plants and Prokaryotes Conserved (PCC) domain 153 266 IPR005175 -
Seca11g01791 336 MobiDBLite consensus disorder prediction 313 336 - -
Seca11g01791 336 SUPERFAMILY AF0104/ALDC/Ptd012-like 150 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01791 Seca-Chr11 21338473 21343526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01791 1 333 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 62.185 1.19e-127 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01791 - - gmx:100801730 513.842