Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01775 ATGGAAATGAACTCCCTTCATCTCCTCCTTCCTCTGTTTCTTTTGGTTGCACTTCCCAGTCTGCAGCTGATTCATGGAAATGCAGAGGTCAGAGCTCTCATGGACTTGAAATCCTCTCTGGACCCTGAAAACAAGCTACTTGGGTCGTGGACCAGTGATGGTGATCCATGCAGTGGTTCCTTCTTAGGGGTTATGTGTAACGAGCACCACAAAGTGGCCAATATATCATTGCCAGCAAGGGATCTTTCTGGCCAAGTCTCTCCAGCAGTGGCTGAACTCAAGTGCTTATCAGGTTTATACCTTCATTACAACCGAATATCTGGAGAGATACCCAGAGAGATTTCAAATCTCAATGAATTGGTCGAGCTCTATCTCGACTTCAATAATCTATCTGGAAGCATTCCTCCAAATATTGGGAACATGACTAGCCTCCAAGTGCTGCAGTTAGGCTATAACCAGCTAGTAGGGAACATACCTGAGCAGATGGGTTCCTTGAAGCAGCTTAATTCTCTTGCTTTACAACATAACAAATTAACTGGTCATATTCCTCTAAGCTTAGGGAATTTGAAGAAGCTACAAAGGCTAAATTTGAGCTTTAACAACTTCAATGGTATGATCCCTGCAACACTAGCTGATATTGCACACTTGGAAGTTCTAGATGTTCAAAACAATTCTCTTTCAGGGATTGTTCCTTCTGGATTGAATAGATTAAGGGAAGGATTCCAAGGTGCAAACAACCCAGGTCTCTGTGGAATTGGGTTTTCTACTTTGGGAGCTTGCAACAAAGATAGCATATATGGTGTTAGCCAGATTGATGCCTTTAATGTCTCAATAAACACTAATCCTCCAACAAAAAACCCAGAGCCTGCAAATACCAAATTGCATTGTAACCAGACACACTGCTCAAGATCAACAAGGTTTCCCCATGCTGTCATTGCAGCAAGTGTTATAACTATCTCTATCACATTCATTGCTATTGGAATTTTCACATTTTTCAGATATCGCCGCCAAAGGCAGAGGATTAGGAATGCATCAGATCCTTCTGAAGGCCAACTTAGTCCTAACCAACCTAAAGAGTTTTACAGCAGAAGTCCATCTCCACTTGTTAATCTTGATTACTATTACAATGGATGGGATATATTGGCTGATGGTGAAAATGGAAGTGGATTGTCCCTTGAATATTTAAACAGTTTTAGGTTTAATATTGATGAGGTTGAATCAGCAACACAGTACCTTTCTGAGGCTAATTTATTGGGTAAGAGCAAATTCTCAGCAGTGTATAAAGGAGTTCTCAAAGATGGTTCTCATGTGGCTATTAGAAGCATTAGTGTGACATTCTGTAAAAGTGAGGAAACTGAATTTGTAAAGGGGTTGAGCCTATTAACCTCACTGAGACATGAGAACATTGTTAAGATGAGAGGTTTCTGTTGCTCAAGGAGTAGAGGTGAATGCTTTCTTATCTATGACTTTGCCACCAGGGGAAAACTGTCCCAATATCTTGACATGGAAGATGGAAGTGACAATGTGCTTGAGTGGTCCAAGAGGGTTTCTATCATCAGGGGCATTGCAAAAGGTATTGGGTATCTGCATAGCAATGAAGCAAGCAAACCTACAATCGTACACCAAAATATTTCAGTTGAAAAAGTTATTCTTGACCATCAGTTTAATCCATTGATCATGGATGCTGGCCTTCCTAAGCTTCTTGCAGATGATGTTGTGTTCTCAGCTCTGAAAGTAAGTGCTGCCATGGGATACCTAGCTCCTGAATACATTACTACTGGACGCTTTACAGAGAAGAGTGACATATATGCATTTGGGGTTATTGTTCTTCAAGTTCTATCTGGGAAGACAACAATAGGTGGTTCAATCAGAATGGCTGTGGAATCTTTCAGATTTGAAGATTTTGTTGACACAAATCTAAATGGAATATATTCTAAATCTGAAGCAGCAATTCTTTCAAAGCTTGCATTGTTGTGCACCCATGAGCTTCCTGACCAAAGGCCAACCATGGTGGAAGTGATTCAGGAGCTGAATATGTTTCCTGCTCTTTCTTCATGA 2058 0.4082 MEMNSLHLLLPLFLLVALPSLQLIHGNAEVRALMDLKSSLDPENKLLGSWTSDGDPCSGSFLGVMCNEHHKVANISLPARDLSGQVSPAVAELKCLSGLYLHYNRISGEIPREISNLNELVELYLDFNNLSGSIPPNIGNMTSLQVLQLGYNQLVGNIPEQMGSLKQLNSLALQHNKLTGHIPLSLGNLKKLQRLNLSFNNFNGMIPATLADIAHLEVLDVQNNSLSGIVPSGLNRLREGFQGANNPGLCGIGFSTLGACNKDSIYGVSQIDAFNVSINTNPPTKNPEPANTKLHCNQTHCSRSTRFPHAVIAASVITISITFIAIGIFTFFRYRRQRQRIRNASDPSEGQLSPNQPKEFYSRSPSPLVNLDYYYNGWDILADGENGSGLSLEYLNSFRFNIDEVESATQYLSEANLLGKSKFSAVYKGVLKDGSHVAIRSISVTFCKSEETEFVKGLSLLTSLRHENIVKMRGFCCSRSRGECFLIYDFATRGKLSQYLDMEDGSDNVLEWSKRVSIIRGIAKGIGYLHSNEASKPTIVHQNISVEKVILDHQFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKTTIGGSIRMAVESFRFEDFVDTNLNGIYSKSEAAILSKLALLCTHELPDQRPTMVEVIQELNMFPALSS. 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01775 685 Gene3D Ribonuclease Inhibitor 176 247 IPR032675 -
Seca11g01775 685 ProSiteProfiles Protein kinase domain profile. 412 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01775 685 FunFam Protein NSP-INTERACTING KINASE 2 383 490 - -
Seca11g01775 685 Pfam Leucine rich repeat 167 226 IPR001611 GO:0005515
Seca11g01775 685 Gene3D Ribonuclease Inhibitor 26 175 IPR032675 -
Seca11g01775 685 MobiDBLite consensus disorder prediction 344 363 - -
Seca11g01775 685 SUPERFAMILY L domain-like 29 237 - -
Seca11g01775 685 Gene3D Transferase(Phosphotransferase) domain 1 492 680 - -
Seca11g01775 685 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 308 678 - -
Seca11g01775 685 FunFam Protein NSP-INTERACTING KINASE 2 139 261 - -
Seca11g01775 685 Gene3D Phosphorylase Kinase; domain 1 385 490 - -
Seca11g01775 685 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Seca11g01775 685 Pfam Protein tyrosine and serine/threonine kinase 416 677 IPR001245 GO:0004672|GO:0006468
Seca11g01775 685 FunFam Protein NSP-INTERACTING KINASE 2 491 681 - -
Seca11g01775 685 FunFam Leucine-rich repeat receptor-like kinase 28 136 - -
Seca11g01775 685 SUPERFAMILY Protein kinase-like (PK-like) 388 679 IPR011009 -
Seca11g01775 685 SMART LRR_typ_2 213 236 IPR003591 -
Seca11g01775 685 SMART LRR_typ_2 141 165 IPR003591 -
Seca11g01775 685 SMART LRR_typ_2 189 212 IPR003591 -
Seca11g01775 685 SMART LRR_typ_2 93 116 IPR003591 -
Seca11g01775 685 SMART LRR_typ_2 117 140 IPR003591 -
Seca11g01775 685 MobiDBLite consensus disorder prediction 342 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01775 Seca-Chr11 21118730 21122837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01775 8 525 Miscellaneous Gene Families AT4G22730 57.197 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Seca11g01775 PK_Tyr_Ser-Thr 8.8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01775 - - gmx:100784155 1028.08