Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01758 ATGGATAACATGTTCCAATTTGACCAAACAGATGATTGCTCCAATTTTTTCCCTCTCCCTTCCAGTCCCAACACTAACAACCCCAATCTCCTACTGATCGAGGCTGACACCAACCTCTGCTCCCATAAACTATCTAGCTCTGATAGCAAACCTAATGAAAACAAGAAGAGAAAGATCATGCATAGAGATATTGAAAGACAAAGAAGGCAAGAAATGGCCACTCTTCACGCTTCTCTGCGGTCACTGCTCCCTGTAGAATACTTAAAGGGAAAACGTTCAATATCAGATCACATGCACCAGGCGGTGAATTATATCAAACACCTTGGGAACAAGATCGAGGAGCTAAATAACAAGAGAGATAGGCTGCGAAAATTGTGCAATACAGGTAAAATGGAAAATTCCCAGGCAGCCAAACAGGATGTTGTTGTGACAGTTAGATCCTGTTGGATAGGAATAGAGGTTGTCATAAACACTGCACATGAAGAAGGGTTTCCTCTTTCAAGAGTGCTCCAAGCTTTAATTAGAGAAGGGTTCAGAGTTATCAATTGCAGTTCAACTAAAGTAAAAGGAAGGTTATTTCATACCATTGAATCCGAGGAGAACAATGATGGAAGAAGAATCGACCAGTCTGAGCTACAACAAAAATTGACAAGCTTAATCAGTCAATCTTAG 672 0.4077 MDNMFQFDQTDDCSNFFPLPSSPNTNNPNLLLIEADTNLCSHKLSSSDSKPNENKKRKIMHRDIERQRRQEMATLHASLRSLLPVEYLKGKRSISDHMHQAVNYIKHLGNKIEELNNKRDRLRKLCNTGKMENSQAAKQDVVVTVRSCWIGIEVVINTAHEEGFPLSRVLQALIREGFRVINCSSTKVKGRLFHTIESEENNDGRRIDQSELQQKLTSLISQS. 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01758 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 56 108 IPR011598 GO:0046983
Seca11g01758 223 Pfam Helix-loop-helix DNA-binding domain 57 108 IPR011598 GO:0046983
Seca11g01758 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 127 IPR036638 GO:0046983
Seca11g01758 223 Coils Coil 98 132 - -
Seca11g01758 223 CDD bHLH_AtORG2_like 57 125 - -
Seca11g01758 223 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 49 221 - -
Seca11g01758 223 MobiDBLite consensus disorder prediction 42 64 - -
Seca11g01758 223 Gene3D - 47 138 IPR036638 GO:0046983
Seca11g01758 223 MobiDBLite consensus disorder prediction 48 64 - -
Seca11g01758 223 FunFam Transcription factor bHLH126 48 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01758 Seca-Chr11 20877968 20879843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01758 54 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 44.000 1.64e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g01758 HLH 2.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01758 - - aprc:113851145 279.641