Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01751 ATGGTGAGGGGAAAAACTCAGATGAAGCGCATAGAAAATGAGACAAGCAGGCAAGTAACTTTCTCCAAGAGAAGGAATGGACTTCTTAAGAAAGCCTTTGAGCTCTCAGTTCTGTGTGATGCTGAAGTCGCACTCATCATTTTCTCTACCAGAGGGAAGCTCTATGAGTTCTCCAGTTCCAGGTACAGTATCTTCAACCCCAACCTCCGATCCTCTTATTAA 222 0.4414 MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFSSSRYSIFNPNLRSSY. 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01751 73 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca11g01751 73 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca11g01751 73 FunFam Agamous-like MADS-box protein AGL13 13 70 - -
Seca11g01751 73 SUPERFAMILY SRF-like 3 61 IPR036879 GO:0003677|GO:0046983
Seca11g01751 73 Gene3D - 13 72 IPR036879 GO:0003677|GO:0046983
Seca11g01751 73 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca11g01751 73 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca11g01751 73 CDD MADS_MEF2_like 3 60 IPR033896 GO:0000977|GO:0045944
Seca11g01751 73 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
Seca11g01751 73 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca11g01751 73 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca11g01751 73 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01751 Seca-Chr11 20772458 20772679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01751 1 60 MADS-box Gene Family AT4G11880 95.000 3.07e-35 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca11g01751 SRF-TF 1.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01751 - - gmx:100805260 116.316