Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01743 ATGGCATCCTATCAAGAAGAGCATGAAATGGATCAAGACGACGACGGAGGAACGACGGACCTCAGCACCAGCGACGGCGACCCAAATAGGGACTCACCTGAAAGCAACAAAAACAACAATGGAGTCTCCAAACGCCTCTTGACGCTGAAGGAGGAACCAACCTATTCCGACCCTGACCCGGACCCGAAGATTAACCCTGCTCCTATGGGGATTGTTCCGGTGGCGATGCAGATGCCTATACCTATGCCTATGCCCGTGCCGGTTAAAGCAACTAAGCGACCCTCCACCAAGGACCGTCACACCAAGGTGGAGGGTCGTGGCCGCAGGATCCGAATACCTGCCACCTGTGCTGCTCGGATCTTTCAGCTGACCCGGGAGTTAGGCCACAAGTCCGACGGCGAAACCGTTCGGTGGCTTCTAGAACACGCTGAGCATGCAATCATCGAGGCCACCGGAACCGGCACCGTTCCAGCCATCGCTGTCTCCGTCGGGGGCACTCTGAAAATCCCAACGACGTCGTCGAACCAGGCCGCAGACGAAGCCAATGCCAAGAAGCGGAAACGGCCGTCTAACAGCGAGTTCGTCGACGTAAACGACGCCGTTTCTCTGCCGTCTGGTCTGGCACCGGTTCAAGCCGCGGTACCACAAGGTCTGGTGCCGGTGTGGGCCGTGGGTAACACGAACATGGTGGTCCCCGCAAACGCCTTCTGGATGATCCCGTCGGCGGCGGCGGCGACAACCACCAACCTTACAGGCACGTCGAACCAGCAACCTCAGATATGGGCTTTATCACCGCCAATGTTCAACGTGGCGGCGAGGCCCATGGCGACAACGAATGTTCCAGAAGTTTGGCCCGTGGCGGCGGGTTTCAGTAACACATCTAACTCAGCGGTGAGTACTAGCACGGTGGGGCCCAAGGTATCAACAAAGTCCAGCATGGCACCCAGTGTTAGTTCCAGCGCGAATAAGACCAGTGGTGGTAGCAAGGCTCATATGTTAAGGGATTTTTCGTTGGAAATTTACGATAAGCAAGAGTTGCAGTTCATGGGCCGGTCTGGGACTCTCAGTCAACATGCTCAAAATTCCAATCAATGA 1095 0.5626 MASYQEEHEMDQDDDGGTTDLSTSDGDPNRDSPESNKNNNGVSKRLLTLKEEPTYSDPDPDPKINPAPMGIVPVAMQMPIPMPMPVPVKATKRPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEHAIIEATGTGTVPAIAVSVGGTLKIPTTSSNQAADEANAKKRKRPSNSEFVDVNDAVSLPSGLAPVQAAVPQGLVPVWAVGNTNMVVPANAFWMIPSAAAATTTNLTGTSNQQPQIWALSPPMFNVAARPMATTNVPEVWPVAAGFSNTSNSAVSTSTVGPKVSTKSSMAPSVSSSANKTSGGSKAHMLRDFSLEIYDKQELQFMGRSGTLSQHAQNSNQ. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01743 364 MobiDBLite consensus disorder prediction 1 69 - -
Seca11g01743 364 MobiDBLite consensus disorder prediction 170 191 - -
Seca11g01743 364 MobiDBLite consensus disorder prediction 294 329 - -
Seca11g01743 364 Pfam TCP family transcription factor 95 181 IPR017887 -
Seca11g01743 364 MobiDBLite consensus disorder prediction 21 45 - -
Seca11g01743 364 ProSiteProfiles TCP domain profile. 96 150 IPR017887 -
Seca11g01743 364 MobiDBLite consensus disorder prediction 294 327 - -
Seca11g01743 364 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 16 341 IPR005333 GO:0003700
Seca11g01743 364 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01743 Seca-Chr11 20422128 20423246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01743 92 349 TCP Transcription Factor Family AT2G45680 48.797 6.38e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca11g01743 TCP 2.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01743 - - gmx:100781096 392.119