Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01737 ATGGAATCATTTGATGAGTCAAATTACTCATGTTCATCATCGGAAACGAGCTCCTCGAACCCTCCAAACAGTCACTCAGATGAAGAAATCATATTAGCATCTTCGCGGCCAAAGAAGCGTGCGGGGCGTCGAATATTCAAGGAGACGAGGCACCCCGTGTACCGAGGAGTGAGAAGAAGGAACAACAACAAGTGGGTTTGCGAGGTGCGTGTTCCTAACGACAAGTCCACGAGGATTTGGCTTGGAACCTACCCAACGCCTGAGATGGCGGCACGTGCACACGACGTAGCAGCCCTCGCGCTTCGGGGAAAATCAGCTTGCCTCAACTTTGCTGACTCAGCATGGCGGTTACGATTACCAGCGTCGACTAATGCGAAGGAGATAAGGCGCGTGGCGGCAGAGGCTGCTGAGGCATTTGCGGTTGAGGACAGTTGTAACAAACAAGTAACTGATTGTGAGGTTTGCAGCAGCGATAGCATTGGAGTTAGCGTCATGGAAGAAGATGATGCTACTAACAATAAACCATTGCAGGGACTGTGTGTTGAAGTTCCACGTGTGTCAGCATTTGAGGAGCAGGAACTGCGTGATTGGATTCGGAGTATGGCGGATGAGCCTTTGAGATCTCCGCTAATTCCTTTTGTAAGATATGGCAGAGAGTGGAACGATGTGGAGGTTGCCGATGCTGAGGTGTCGTTGTGGAGTTTTACCATCTGA 714 0.5028 MESFDESNYSCSSSETSSSNPPNSHSDEEIILASSRPKKRAGRRIFKETRHPVYRGVRRRNNNKWVCEVRVPNDKSTRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLRLPASTNAKEIRRVAAEAAEAFAVEDSCNKQVTDCEVCSSDSIGVSVMEEDDATNNKPLQGLCVEVPRVSAFEEQELRDWIRSMADEPLRSPLIPFVRYGREWNDVEVADAEVSLWSFTI. 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01737 237 ProSiteProfiles AP2/ERF domain profile. 53 111 IPR001471 GO:0003700|GO:0006355
Seca11g01737 237 MobiDBLite consensus disorder prediction 1 42 - -
Seca11g01737 237 SUPERFAMILY DNA-binding domain 53 113 IPR016177 GO:0003677
Seca11g01737 237 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Seca11g01737 237 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Seca11g01737 237 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 234 IPR045277 GO:0003700
Seca11g01737 237 CDD AP2 54 113 IPR001471 GO:0003700|GO:0006355
Seca11g01737 237 Gene3D AP2/ERF domain 53 112 IPR036955 GO:0003700|GO:0006355
Seca11g01737 237 SMART rav1_2 53 117 IPR001471 GO:0003700|GO:0006355
Seca11g01737 237 FunFam Ethylene-responsive transcription factor 2 52 112 - -
Seca11g01737 237 MobiDBLite consensus disorder prediction 1 30 - -
Seca11g01737 237 Pfam AP2 domain 52 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01737 Seca-Chr11 20296237 20296950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01737 26 139 AP2-EREBP Transcription Factor Family AT1G12610 74.561 3.22e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g01737 AP2 7.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01737 - - pvu:PHAVU_003G212800g 281.182