Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01735 ATGGCCTCTTCTTCTTCTTCTTCTAGAAGGCACCCAGTGTACCATGGAATCCGATGCCGTGGAGGAAAATGGGTAACTGAAATCCGTGAGCCACGTAAGACAAGTCGCATATGGTTGGGCACATTCCCCACTCCGGAAATGGCGGCCGCTGCCTATGACGTGGCAGCGTTGGCTCTCAAAGGAGGGGAAGCGGTTCTCAACTTCCCTGATTCAGTTCACAAGTATCCAATTCCTGCATCCAAATCCCCTGCTGATATCCGTACTGCTGCCACTGCTGCAGCTCAATTAATGAAGCCTGATGATCAATCCTCCAATCACAACGAATCAAATAATGACACAGTACTACTTCATCACGAGCCTTATCATGCTGGTGCTGGTGGTTATCCTTTTTCTGAAACTGAGTTCCTTGATGAGGAAGCCATATTCTCCATGCCAAGTTTGCTCGTTGAAATGGCTGAGGGAATGCTGCTCTCCCCGCCCAGAATCAGCCCCACACAGTATGACGATAACTCGCCTGAAAATTCTGGTGGAGAAAGTTTGTGGAACTATTTTTGA 555 0.4847 MASSSSSSRRHPVYHGIRCRGGKWVTEIREPRKTSRIWLGTFPTPEMAAAAYDVAALALKGGEAVLNFPDSVHKYPIPASKSPADIRTAATAAAQLMKPDDQSSNHNESNNDTVLLHHEPYHAGAGGYPFSETEFLDEEAIFSMPSLLVEMAEGMLLSPPRISPTQYDDNSPENSGGESLWNYF. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01735 184 Gene3D AP2/ERF domain 13 70 IPR036955 GO:0003700|GO:0006355
Seca11g01735 184 SUPERFAMILY DNA-binding domain 13 71 IPR016177 GO:0003677
Seca11g01735 184 ProSiteProfiles AP2/ERF domain profile. 1 69 IPR001471 GO:0003700|GO:0006355
Seca11g01735 184 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 183 IPR045277 GO:0003700
Seca11g01735 184 Pfam AP2 domain 12 61 IPR001471 GO:0003700|GO:0006355
Seca11g01735 184 SMART rav1_2 13 75 IPR001471 GO:0003700|GO:0006355
Seca11g01735 184 MobiDBLite consensus disorder prediction 163 184 - -
Seca11g01735 184 MobiDBLite consensus disorder prediction 160 184 - -
Seca11g01735 184 CDD AP2 14 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01735 Seca-Chr11 20258776 20259330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01735 3 183 AP2-EREBP Transcription Factor Family AT5G52020 53.439 3.97e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g01735 AP2 2.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01735 - - vra:106768065 233.032