Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01722 ATGGCATCGTCAACCAATAGCGTCAGCTACGATGTGCCATGGGTAGAGAAGTACCGACCCAACAAGGTCGCTGACATCGTTGGCAACGAAGACGCCGTCTCTAGGCTCCAAATCATCGCTCGTGATGGCAACATGCCAAACCTCATTTTATCTGTAGGTCCTCCTGGAACTGGGAAAACCACTAGTATACTGGCCCTTGCACATGAGCTTCTAGGACCCAATTGCAAGGAAGCAGTTCTGGAACTAAATGCATCAGATGATAGAGGAATAGATGTTGTGAGGAACAAGATCAAGATGTTTGCTCAGAAGAAAGTAACACTGCCTCCTGGGCGACACAAAATAGTTATACTCGATGAAGCTGACAGCATGACATCAGGAGCACAGCAAGCTTTGAGAAGGACAATGGAGATATATTCTAATTCTACTCGATTTGCTCTTGCTTGTAACACGTCAGCGAAGATTATTGAGCCGATTCAAAGTAGATGTGCCATTGTGAGGTTTTCGCGATTATCTGATCAAGAGATACTAGGCCGCCTCATGGTTGTTGTTCAAGCTGAGAAGGTTCCCTATGTTCCTGAAGGACTTGAAGCCATCATTTTCACTGCTGATGGTGACATGAGGCAGGCATTGAATAACTTACAAGCAACATACAGTGGGTTCCAGTTCGTCAACCAAGCAAATGTTTTTAAGGTTTGTGACCAGCCGCATCCACTGCATGTGAAGAATATGGTGCGTAATGTGATTGAAGGGAATTTTGATGAGGCTTGTATGGGGCTCAAGCAACTGTATGACTTGGGATATTCCCCCACAGATATCATCACCACACTTTTTCGTATAATAAAAAATTATGATATGGCTGAGTACATGAAACTGGAATTCATGAAGGAAACTGGATTTGCTCACATGAGAATTTGTGACGGAGTTGGTTCTTATCTTCAGCTGTGTGGCCTATTAGCTAAGCTTTCTCTAGTTCGTGAAACTGCTAAAGCTGCATGA 996 0.4398 MASSTNSVSYDVPWVEKYRPNKVADIVGNEDAVSRLQIIARDGNMPNLILSVGPPGTGKTTSILALAHELLGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEGNFDEACMGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYMKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSLVRETAKAA. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01722 331 Gene3D - 171 234 - -
Seca11g01722 331 SUPERFAMILY post-AAA+ oligomerization domain-like 234 325 IPR008921 GO:0003677|GO:0006260
Seca11g01722 331 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 13 315 - -
Seca11g01722 331 Pfam Replication factor C C-terminal domain 235 320 IPR013748 -
Seca11g01722 331 Gene3D - 5 170 IPR027417 -
Seca11g01722 331 Pfam ATPase family associated with various cellular activities (AAA) 50 167 IPR003959 GO:0005524|GO:0016887
Seca11g01722 331 Gene3D - 235 327 - -
Seca11g01722 331 FunFam replication factor C subunit 2 235 327 - -
Seca11g01722 331 CDD HLD_clamp_RFC 170 232 - -
Seca11g01722 331 CDD AAA 27 165 - -
Seca11g01722 331 FunFam Replication factor C subunit 4 171 234 - -
Seca11g01722 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 232 IPR027417 -
Seca11g01722 331 SMART AAA_5 45 171 IPR003593 GO:0016887
Seca11g01722 331 FunFam Replication factor C subunit 4 6 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01722 Seca-Chr11 20009883 20013399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01722 10 330 Core DNA Replication Machinery Family AT1G63160 92.212 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01722 K10755 - gmx:100781364 623.624