Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01721 ATGCATTTTTATAATTTTTTCCCTAGCAGTATGGCAAAGCATTTGGAATCAGCCAACACAATGTTTTCTTTTATTTGGTGGGTTATTGGATTCTATTGGGTATCTGCTGATGGTCAAGCTTTGGTCCAAGATTCTCCTCAGCTTTACTGGTTATGTATAGTCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCACTGGCATGCATCATTGGCATTGCTGTTTGCTGCTGTCTTCCGTGTATCATTGCACTTCTGTATGCAGTTGCAGACCAGGAAGGGGCAACAAAAGAAGACCTTGAGCAGTTGTCAAAATTCAAATTCCAAAGAAAAAGTAATGAGAAACTTGCTGGTAGTACACAAGGACCTGTTGGAGGAATAATGACTGAATGCCATACTGATACTCCAATTGAACATGTGCTTTCTGATGAGGATGCGGAATGTTGTATCTGCCTTTCTGCTTATGAAGATGGGGTTGAACTGAGACAACTTCCTTGCGGTCACCATTTTCACTGTACCTGCGTGGACAAATGGCTGTATATTAATGCTACTTGCCCCCTCTGCAAATATAACATCTTGAAAAGCAGCAGCCATGGTCAAGAGGAAGTTTAG 618 0.4126 MHFYNFFPSSMAKHLESANTMFSFIWWVIGFYWVSADGQALVQDSPQLYWLCIVFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDLEQLSKFKFQRKSNEKLAGSTQGPVGGIMTECHTDTPIEHVLSDEDAECCICLSAYEDGVELRQLPCGHHFHCTCVDKWLYINATCPLCKYNILKSSSHGQEEV. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01721 205 FunFam E3 ubiquitin-protein ligase At1g12760 136 201 - -
Seca11g01721 205 Pfam Ring finger domain 149 191 IPR001841 -
Seca11g01721 205 SUPERFAMILY RING/U-box 139 197 - -
Seca11g01721 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 204 IPR013083 -
Seca11g01721 205 ProSiteProfiles Zinc finger RING-type profile. 150 191 IPR001841 -
Seca11g01721 205 PANTHER TARGET OF ERK KINASE MPK-1 9 196 - -
Seca11g01721 205 SMART ring_2 150 190 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01721 Seca-Chr11 20000296 20003854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01721 13 200 C3H Transcription Factor Family AT1G68070 57.068 1.76e-75 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01721 - - qsu:111999490 358.992