Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01700 ATGATGGGATTGTTGACCGCTGCCTCGTCGGAGAAGAGTGGTCGCATGACAAGGTTTATCATTTTGGAACTGACGGGCGACAGGGGGAAGATAAATTGCACCTTCTTTGGTGATTATGTCGACGTAGTGAACGGTTACCTTGCGAGGGAGAGTAAGGAGCTTCCCGTTGTCGTGGTTCAGTACGCTAGGGTGAAGGCATACAAGGGGGTGGTGTCCATCCAGAATGTGATGAACACGACAACTATAATGTGGAATCCTGACATTCCCGAGGCCATTGAGTTTAAAAGGAGCTTGGCAGAACATGGATTTGAAACTGAGGTTGCGGTTGGGGCGATTGGAGAAGCACACAATGACCTCAGTATGAAGGATGATTTCCTTGGTTTTTATCCCAGGAAAATAATTAATGAGTTACATATGACAGAGGAGGAGGGAAATTTTATAGTCATTGCAACTGTGGCTGCCATACTTGGGGATGATGCATGGCGGTATTCGGCGTGCTCCTGCATGAAAGCTGTGAATGAGGAGGATGGGGTTTTCTTCTGCCCAGTGTGCAAAGCTAATGTTAAGGAAGTTACACCTAGGTTCAAGTTGAAGATTGAGGTCTTTGACGGTGATGACACGACTGCTTTCATTCTCTTTGACCAAGATGCCCAGTTTCTGCTCGGGAAGACATGTCCAGAATTTGTCACAGAGGCAAAGGACCCTGAATTTGGTGAAATTCCTGATGAGTTTCAACTCTTGGTTGGGAAGGAAATGCTTTTCAAGGTTGACAAGGGTCCTGAGTATGCCTTTAGGTTTGATGATACTTTTAGGGTGAGGAGGATCTGTGTTGATCCTGAAATCATGAAAATGTTCAAAGAGTCTGTTGTTATTACCACCCCTGAGAAGAATAAATTTGTCCCACCATTCCCCACGCTTGAGGAAGCGAGTTCAAGTGGAACTGTAAAAGGGGCTGACAAAGAGGTTGTGAATTTGTGTGGCGAGGTGCAGCTGGTTTCAGGAGGTCTTATTGAGGGAGGCGGTGGTGACACAATCAGTGAGAATGAAGGGAAATCTAATGCTGAATCCTTCCTCGCAGTGGACCCTGTTGTTGCCCCTTTTGCCATGACTGATGTGGTGGACTTGGAGAGTCAGGGATATGGTGATGTGATCGTAGTTCAAAGTGAGAAACCTTTGGTGGATGAATTTAACCTAAAAAAAAAGAAGAATATGAGGCTCAAGAAGGTTAAGATCGAGCGTGAATGA 1245 0.457 MMGLLTAASSEKSGRMTRFIILELTGDRGKINCTFFGDYVDVVNGYLARESKELPVVVVQYARVKAYKGVVSIQNVMNTTTIMWNPDIPEAIEFKRSLAEHGFETEVAVGAIGEAHNDLSMKDDFLGFYPRKIINELHMTEEEGNFIVIATVAAILGDDAWRYSACSCMKAVNEEDGVFFCPVCKANVKEVTPRFKLKIEVFDGDDTTAFILFDQDAQFLLGKTCPEFVTEAKDPEFGEIPDEFQLLVGKEMLFKVDKGPEYAFRFDDTFRVRRICVDPEIMKMFKESVVITTPEKNKFVPPFPTLEEASSSGTVKGADKEVVNLCGEVQLVSGGLIEGGGGDTISENEGKSNAESFLAVDPVVAPFAMTDVVDLESQGYGDVIVVQSEKPLVDEFNLKKKKNMRLKKVKIERE. 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01700 414 CDD RPA1_DBD_B_like 14 98 - -
Seca11g01700 414 Pfam Replication factor-A C terminal domain 146 258 IPR013955 -
Seca11g01700 414 CDD RPA1_DBD_C 137 256 IPR047192 -
Seca11g01700 414 PANTHER OS03G0429900 PROTEIN 56 257 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca11g01700 414 Gene3D - 128 286 IPR012340 -
Seca11g01700 414 SUPERFAMILY Nucleic acid-binding proteins 10 102 IPR012340 -
Seca11g01700 414 Gene3D - 2 108 IPR012340 -
Seca11g01700 414 SUPERFAMILY Nucleic acid-binding proteins 128 283 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01700 Seca-Chr11 19627627 19629676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01700 11 226 Core DNA Replication Machinery Family AT2G06510 21.795 1.35e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01700 - - lja:Lj1g3v3385890.1 297.745