Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01694 ATGGATGATGTAATGGAGGCTCTCTCCGGTGCGCATTTCTCCGGTTGGCATCCTTCAACGACGTCGTCTTCTTCTCCAATGCCAGCACCTTCTCATTCCCCTTTCGTGATCGGGGTCTCTGGTGGTACGGCATCAGGGAAAACCACGGTGTGTGACTTGATCATTCAACAACTGCAAGATCACAGAGTTGTGCTCGTTAGTCAGGATTCTTTCTACCGTGGATTGACAAATGATGAGTTGAAACGCGTTCATGAGTATAATTTTGATCATCCTGATGCATTTGATACAGAGCAACTTGTAGAAACCCTCAGCAAGCTCAAATCTGGACAGTCAGTTCAGGTTCCAATATATGATTTTAAGCTCCACCAGAGATCTTCTGACAGATTCCGACAGGTCAATGCATCTGAGGTAATCATTCTAGAGGGTATATTGGTTTTTCATGAACAACGTGTTCGCAACATGATGAACATGAAGATATTTGTCGATGCAGATCCTGATGTAAGGCTTGCCCGCAGAATAAGACGTGATACTGTTGAGAGGGGTAGAGATGTACACTCTGTGCTGGAACAGTACGCAAAATTTGTTAAGCCTGCCTTCGATGATTTTATTCTTCCATCCAAAAAGTATGCTGATGTCATAATACCTCGTGGGGGAGAGAATCGTGTAGCAATTGACTTGATAGTTCAACATATCCGCACTAAGCTAGGCCAACATAACCTTTGTAAGATATATCCAAATTTGAATGTTATACAGTCTACTTTCCAGACTAGAGGCATGCACACTCTTATTCGTGACAGAGAAATATCAAAGCATGACTTTGTTTTTTATTCAGATCGGCTAATTCGTTTGGTAGTGGAACATGGTCTTGGTTACTTGCCATTTACAGAGAAACAAGTTATCACACCTACAGGTCTGTCTTGGGAAGGGGAAATTCCATTCCATCGTTTGAATCTGCCAGCAAGTGTTGCATTTATTATGTTTTAA 984 0.4217 MDDVMEALSGAHFSGWHPSTTSSSSPMPAPSHSPFVIGVSGGTASGKTTVCDLIIQQLQDHRVVLVSQDSFYRGLTNDELKRVHEYNFDHPDAFDTEQLVETLSKLKSGQSVQVPIYDFKLHQRSSDRFRQVNASEVIILEGILVFHEQRVRNMMNMKIFVDADPDVRLARRIRRDTVERGRDVHSVLEQYAKFVKPAFDDFILPSKKYADVIIPRGGENRVAIDLIVQHIRTKLGQHNLCKIYPNLNVIQSTFQTRGMHTLIRDREISKHDFVFYSDRLIRLVVEHGLGYLPFTEKQVITPTGLSWEGEIPFHRLNLPASVAFIMF. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01694 327 PRINTS Uridine kinase signature 34 51 - -
Seca11g01694 327 PRINTS Uridine kinase signature 109 124 - -
Seca11g01694 327 PRINTS Uridine kinase signature 64 75 - -
Seca11g01694 327 PRINTS Uridine kinase signature 180 191 - -
Seca11g01694 327 PRINTS Uridine kinase signature 166 176 - -
Seca11g01694 327 PRINTS Uridine kinase signature 202 215 - -
Seca11g01694 327 CDD UMPK 36 234 IPR000764 -
Seca11g01694 327 Gene3D - 238 323 IPR029057 -
Seca11g01694 327 SUPERFAMILY PRTase-like 249 312 IPR029057 -
Seca11g01694 327 MobiDBLite consensus disorder prediction 15 30 - -
Seca11g01694 327 NCBIfam uridine kinase 34 234 IPR000764 -
Seca11g01694 327 PANTHER URIDINE KINASE 27 308 - -
Seca11g01694 327 Gene3D - 31 237 IPR027417 -
Seca11g01694 327 ProSiteProfiles UvrC family, homology region profile. 122 223 IPR001162 GO:0009381
Seca11g01694 327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 227 IPR027417 -
Seca11g01694 327 MobiDBLite consensus disorder prediction 15 34 - -
Seca11g01694 327 Pfam Phosphoribulokinase / Uridine kinase family 36 222 IPR006083 GO:0005524|GO:0016301
Seca11g01694 327 FunFam Uridine kinase 31 237 - -
Seca11g01694 327 Pfam Uracil phosphoribosyltransferase 252 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01694 Seca-Chr11 19541519 19547832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01694 1 309 PRT Gene Family AT5G40870 74.242 1.34e-173 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01694 K00876 - gmx:100816209 562.377