Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01688 ATGGCTACTTGTACTTCTCTTTCCCTTTGTCCTCCCAACCTCTATTACAGACACCGCCCTCACCCAACAAGGCGTTCCCCTTCTTGCTCTTTTCCCTCCTCTGCCCTCCCAGATACTGATGGACCTAAAGTACTGCGCAAAAGATCAAGAAGAATTGAAGGTCCTAGAAAAAGCATGGAGGACACTGTTCAACGCAAGATGGAGCAATTTTATGAAGGATCAGATGGACCACCCCTCCGAGTTCTTCCTATCGGTGGGTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGGAACTATGATCGCTATATCCTCATTGATGCTGGTGTCATGTTTCCAGACTATGATGAACTTGGGGTCCAAAAGATCATACCTGATACAACATTTATAAAAAAATGGAGCCACAAAATTGAAGCAGTAGTTATAACACATGGTCATGAAGATCATATTGGTGCATTGCCTTGGGTCATCCCAGCGTTGGATTCTCATACACCAATTTTTGCATCATCATTTACAATGGAGCTTATAAGAAAACGTTTGAAGGACCATGGTATTTTTGTTCCATCCCGACTCAAAATATTTAGAACAAGGAAGAAGTTTGTAGCTGGGCCATTTGAGATAGAGCCTATCACGGTGACCCATTCTATTCCTGATTGCTGTGGACTGGTGCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGATTGGAAGATCGATGAAACACCATTAGATGGTAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCCAAAGAAGGAGTCACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAACCAGTGAATCTGTTGTGGCAGATGCATTATTGAGGCATATTTCAGCTGCTAAAGGAAGGGTTATAACAACCCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTGAAAGCTGCTGCTGATTTGACTGGTAGAAAGCTGGTATTTGTTGGCATGTCTTTAAGGACATATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCACCAAAGGATTTGCTAATTGTAACAACAGGCTCTCAAGCAGAGCCACGTGCTGCCTTGAATCTTGCATCCTACGGAAGTAGTCATTCTTTCAAACTGACAAAGGAAGATGTTGTTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTCATGGAAATGCTAAACCGCATATCAGAGATTGGATCAACAATAGTCATGGGGAAGAATGAATGCCTGCACACATCTGGTCATGGGTATCGTGGAGAATTAGAGGAAGTCCTTAGAATTGTGAAGCCACAACATTTTCTTCCCATACATGGAGAACTCTTGTTCTTGAAGGAGCATGAATTACTTGGAAAATCAACTGGCATTCGGCACACTGCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAGAGTCCTTTCTAATGGCTTTATTTCACTTGGAAAAGAGAATTTGCAGTTGAAGTATAGTGATGGTGACAAAGCATTTGGTACATCAAGTGAACTCTTCATTGATGAAAGATTGAAAATTGCATTAGATGGCATCATTGTGGTTAGCATGGAAATATGTCGCCCTCAGAATTTAGACAGTTTTTCTGAAAACACTTTAAAAGGGAAGATAAGAATTACTACAAGATGTCTATGGCTTGACAAAGGGAAGCTGTTGGATGCACTCCATAAAGCTGCTCATGCTGCTCTTTCAAGCTGCCCTGTAAACTGTCCACTGTCTCACATTGAAAGAATTGTGTCTGAAATGTTAAGGAAAATGGTGAGGAAGTATAGTGGCAAACGGCCTGAAGTTATTGCCATTGCCATAGAAAATCCTGCAGCTGTTCTTGCTACTGAGATAAACACAAGGTTGTCTGGAAAATCCCATGCGTATGGGATATCAACATTGAGAAAAGTGGTGGATGGACTCGGGAAAGAAAATCAGTCCACTAGAATGCAAATGAGAGGTAACACCAATGCACATTTGAAGAATTCATTAGAACATGACGGTGTTGACCTTGAAGGTCTACTACCTACAGAAGATGTCGCTTCTTCGAATGGAGCTGAGGGTGATTTGTCTGTTACAGAGGATTCAGATGAATTTTGGAAAGCATTTATTGAATCCTCAGCACTTAGGAAATCAATCAAATCTAACAATGGTTATGCTCCACAAAAGGAGAAGTCCCAGGTGAAGAATGATGGTTCAGAAGACGCTGAAGAATGCAAGTCTGAAAATACATCAAGTACTGAAGCCAAATCTTCAACATCAGTAAAGAGAAGAAACAAATGGAAAGAGGAGGAAGTTAAGAAGCTGATTGGTATGCGCTGGGAACTGAATGACAGATTTCAAGTCGTAAAGGGAAGGATGGGCCTCTGGGAAGAAATATCTCAGACCTTGTTGGCTAACGGGATCAGCAGAAACCCTGGGCAGTGTAAATCTATGTGGACATCTTTGGTACAAAAATATGAGGAGGTCAAGAATGAGAAGGATGGAAAGAAAAGTTGGCCATATCTTGAGGACATGGAGAGGATTCTGTCTGATAATGAGGCACTAGCAAAAAAATGA 2646 0.4146 MATCTSLSLCPPNLYYRHRPHPTRRSPSCSFPSSALPDTDGPKVLRKRSRRIEGPRKSMEDTVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIKKWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKDHGIFVPSRLKIFRTRKKFVAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRHISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSFKLTKEDVVLYSAKVIPGNESRVMEMLNRISEIGSTIVMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDKAFGTSSELFIDERLKIALDGIIVVSMEICRPQNLDSFSENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLSHIERIVSEMLRKMVRKYSGKRPEVIAIAIENPAAVLATEINTRLSGKSHAYGISTLRKVVDGLGKENQSTRMQMRGNTNAHLKNSLEHDGVDLEGLLPTEDVASSNGAEGDLSVTEDSDEFWKAFIESSALRKSIKSNNGYAPQKEKSQVKNDGSEDAEECKSENTSSTEAKSSTSVKRRNKWKEEEVKKLIGMRWELNDRFQVVKGRMGLWEEISQTLLANGISRNPGQCKSMWTSLVQKYEEVKNEKDGKKSWPYLEDMERILSDNEALAKK. 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01688 881 CDD GT1 788 853 - -
Seca11g01688 881 MobiDBLite consensus disorder prediction 744 787 - -
Seca11g01688 881 Pfam Myb/SANT-like DNA-binding domain 787 871 IPR044822 -
Seca11g01688 881 Gene3D - 790 851 - -
Seca11g01688 881 SUPERFAMILY Metallo-hydrolase/oxidoreductase 79 493 IPR036866 -
Seca11g01688 881 SMART Lactamase_B_5a 91 288 IPR001279 -
Seca11g01688 881 CDD RNaseJ_MBL-fold 82 493 - -
Seca11g01688 881 ProSiteProfiles Myb-like domain profile. 782 846 IPR001005 -
Seca11g01688 881 MobiDBLite consensus disorder prediction 21 58 - -
Seca11g01688 881 PANTHER RIBONUCLEASE J 1 881 - -
Seca11g01688 881 MobiDBLite consensus disorder prediction 756 773 - -
Seca11g01688 881 Gene3D - 280 430 IPR042173 -
Seca11g01688 881 Gene3D - 83 495 IPR036866 -
Seca11g01688 881 Pfam Beta-lactamase superfamily domain 102 238 IPR001279 -
Seca11g01688 881 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 435 473 IPR011108 -
Seca11g01688 881 MobiDBLite consensus disorder prediction 41 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01688 Seca-Chr11 19470737 19490213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01688 789 873 Trihelix Transcription Factor Family AT2G38250 34.483 3.34e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca11g01688 Lactamase_B_2 1.2e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01688 - - gmx:100814619 1467.98