Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01684 ATGGCGGCAGGGCGAAAGAGTACTTTGAGGAGCAGGGAATCTTACAAATATAATTCCATCAAGGAATTTGATCACTGTAAGAATGTTTCTGCTGGCGTGGAAGTGGATGGTTTTCTTGGTGGAAAAGAGGAGAGAGAGGAAGGTGAGATCTTTGTTGAACATGGGGAATATGCACATGACCCAGGGTTTCAAGCTGTTGATGGGAAGGAAACTTTGCCACCGCCAGAGAAGAGGAGAAAAATTTCTCCAATTGTGTGGGAGCTGGGAGAGAAGGAAGGAAGAAACTCTTCAAAAAGTAGGGTCAGACAGGTTACTGCAGTGTCCCAATTCCATCCATCCCTACCAAACATTCCTGGTGCCCATGGTGTCTTAAGTGGTTCTTCACCAAATTCCTCTTGTGTGTTGCCTCAAGAACATTCGCAGGACTGTAACCAATATGTGGATGGAAAAAAAGATGTGCAAGGATGGAACATCACTATGTCAAGATGGGCTTGTGATGGTCTTTCACCAACAGGCACTGATGATAAATACAAGCAAGTCACAGGAACCTCAAGTTCTGAAGTTGATGAATCCCAAAGAGAATGTCCAGAGAGCACAATTACTAGATCATCAGGATCAGGAAGCAGCAGAAATTGTTCCCTGGGACTTTCTACTGAAGATACTGATTTTGACTCCAGTGATGATGTTGAGGAAAGTGATTCGCCATCTTCTCATAGAGATGGTGGTTCAATGTATCCGCAGAGAAATATAAACATGCTTCAGAGCTGCAGAAGTGTACACGATTTTGAAATGATTAAAAAAATAAACGAAGGAACTTATGGTGTTGTCTATAAAGCCAAGGATAAGAAGACTGGAGAAATAGTAGCATTGAAAAAGGTGAAGATGAACATAGAGAGGGATGGTTTTCCAATGTCATCCTTAAGGGAAATAAACATTCTATTGTCTTTCAATCATCCCTTTATTGTGGATGTTAAGGAAGTAGTTGTGGATAATTATGATGGAACTTTCATGGTAATGGAGTACATGGAGCATGACTTGAAGGGACTTATGGAGCTTAAAAAACAACCTTTTAGTATAGGTGAAGTAAAATATATGGTGCTTCAACTTCTTGAAGGTGTCAAGTATCTTCATGATAATTGGATTCTCCATAGGGACTTGAAGACATCAAATATTCTACTAAACAACAAAGGAGAGCTGAAAATATGTGACTTTGGGTTGTCAAGGCAGTATGGAAGCCCATTGAAGCCATATACTCCTGTTGTGGTTACACTGTGGTATAGAGCACCTGAACTTTTATTAGGTGCTAAAAAATACTCAACAGCAATTGACATGTGGTCGGTGGGTTGCATAATGGCTGAATTAGTTGCCAAGGAGCCTCTGTTCAGGGGTAAAACCGAAATTGAACAACTTCATAAGATTTTTCAAACCCTGGGTACACCAGATGAGAAAATTTGGCCAGGATTATCTAAATTACCGGGGTCTAAAACAAATTTTGTTAAGCAACCGTATAATATGCTAAGGAAGAAGTTTCCAGCTGCATCTTTCACTGGTTCACCAGTTTTATCTGAGTTGGGCTTTGACTTGATGAAGAAGCTTCTAACTTACGACCCTGAAAAGAGGATAACTGCAGAAGATGCTCTCCTTCATGATTGGTTCCGTGAAGCTCCACTTCCCAAATCTGATTTCAAGCCTGTTTTTTCTTGGCAGTGA 1710 0.407 MAAGRKSTLRSRESYKYNSIKEFDHCKNVSAGVEVDGFLGGKEEREEGEIFVEHGEYAHDPGFQAVDGKETLPPPEKRRKISPIVWELGEKEGRNSSKSRVRQVTAVSQFHPSLPNIPGAHGVLSGSSPNSSCVLPQEHSQDCNQYVDGKKDVQGWNITMSRWACDGLSPTGTDDKYKQVTGTSSSEVDESQRECPESTITRSSGSGSSRNCSLGLSTEDTDFDSSDDVEESDSPSSHRDGGSMYPQRNINMLQSCRSVHDFEMIKKINEGTYGVVYKAKDKKTGEIVALKKVKMNIERDGFPMSSLREINILLSFNHPFIVDVKEVVVDNYDGTFMVMEYMEHDLKGLMELKKQPFSIGEVKYMVLQLLEGVKYLHDNWILHRDLKTSNILLNNKGELKICDFGLSRQYGSPLKPYTPVVVTLWYRAPELLLGAKKYSTAIDMWSVGCIMAELVAKEPLFRGKTEIEQLHKIFQTLGTPDEKIWPGLSKLPGSKTNFVKQPYNMLRKKFPAASFTGSPVLSELGFDLMKKLLTYDPEKRITAEDALLHDWFREAPLPKSDFKPVFSWQ. 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01684 569 PANTHER CELL DIVISION PROTEIN KINASE 261 558 - -
Seca11g01684 569 Pfam Protein kinase domain 262 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01684 569 SUPERFAMILY Protein kinase-like (PK-like) 255 558 IPR011009 -
Seca11g01684 569 Gene3D Transferase(Phosphotransferase) domain 1 344 564 - -
Seca11g01684 569 SMART serkin_6 262 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01684 569 MobiDBLite consensus disorder prediction 123 140 - -
Seca11g01684 569 MobiDBLite consensus disorder prediction 164 247 - -
Seca11g01684 569 MobiDBLite consensus disorder prediction 174 189 - -
Seca11g01684 569 Gene3D Phosphorylase Kinase; domain 1 246 343 - -
Seca11g01684 569 ProSiteProfiles Protein kinase domain profile. 262 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01684 569 FunFam cyclin-dependent kinase G-2 isoform X1 247 343 - -
Seca11g01684 569 MobiDBLite consensus disorder prediction 56 76 - -
Seca11g01684 569 MobiDBLite consensus disorder prediction 119 140 - -
Seca11g01684 569 MobiDBLite consensus disorder prediction 197 220 - -
Seca11g01684 569 CDD STKc_CDC2L1 256 552 IPR045267 GO:0004674|GO:0005524|GO:0006468
Seca11g01684 569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 381 393 IPR008271 GO:0004672|GO:0006468
Seca11g01684 569 FunFam Cyclin-dependent kinase G-2 344 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01684 Seca-Chr11 19451343 19453961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01684 257 558 Core Cell Cycle Gene Families AT5G10270 46.541 2.40e-87 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Seca11g01684 Pkinase 1.8e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01684 K08818 - gmx:100788840 712.22