Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01674 ATGTCCCCTCCTCTTTATAGTGACTTCAAGGGTGAGCTCATGGATGAAAATCCTGTGTTTTTTCTTGATCTCTGCTCAATGGGTTCCCATTCCTATTCTCATCTTCCTATTTTTGATAGCAGTGATTCTAATTGGACCCTGCCCTTTTCCAATGAAACCATCAGGGAAAACAAGAGAGTGAAGAGAACCATAGACATCCCCTTTTACTTTGGAAATTTTAGCAGCCACTCAAGCATTAGTTGTAACAGTAGCAGAGATAGCAGTTGCTATAGTTCCCTCAGCAGTGTGAATAGCATAACGAGGCTTCATTTCAGAGATCACATAAGGACTTATAAACAGAGATATCCTGCTGAAGCTGTTGAAGAGGCAGTTGAAGATATGCACAATTCTGAAATTGTTGGAACTGAAGAAGATGGATGTGCTGATGGAATGCTGAGGCTTGTTGAACTTCTAATTGCTTGTGCTGAAGCTGTTGCATGTCGTGACAAAGCACATGCTTCTATATTACTATCTGAACTTAAAGCCAATGCTTTGGTATTTGGAACCTCATTCCAGAGAGTTGCATCTTGTTTTGTGCAAGGGCTAACTGAGAGGCTCACTCTGATTCAACCAATTGGGCCTATTGGGGTAACACAATCCATGATGAACATTATGGATGCAGCATCTGAAGAAATGGAAGAAGCATTTAGATTGGTATATGAGATATGCCCACATATTCAATTTGGACACTTTGTGGCTAATGCTACAATATTGGAAGCCTTTGAGGGTGAGAGTTTTGTTCATGTGGTGGACCTTGGCATGAGCCTTGGTCTTCCTCATGGCCATCAGTGGCGGAGACTGATCCAAAGCCTTGCTAACCGTACCAGCCACCGTGTACGGCGGCTCCGAATCACGGCGGTTGGTCTTTGCATTTCAAGACTCCAAACCATTGGTGAGGAACTCTCAGTTTATGCTAATAATTTGGGCATTCATTTGGAGTTCTCAGTGGTGCAAAAGAATCTAGAGAATTTGCAACCTGAAGATATAAAATTGAATGAGGAAGAGGTTCTTGTGGTGAATAGCATCCTTCAGCTGCATTGTGTGGTTAAAGAAAGCCGTGGTGCTTTGAATTCTGTGCTGCAAATGATTCATAGGCTTTCACCTAAAGTGTTGGTGATGGTTGAGCAGGATTCTAGTCACAATGGACCTTTTTTTCTTGGGAGGTTTATGGAAGCATTGCACTATTACTCTGCTATTTTTGACTCATTGGATGTTATGTTGCCAAAGTATGACACTAAGAGGGCCAAAATAGAGCAGTTTTACTTTGCTGAGGAGATAAAGAACATTGTGAGTTGTGAGGGTCCATTGAGGATGGAGAGGCATGAGAAAGTTGATCAATGGCGTAGGAGGATGAGCAGGGCAGGGTTTCAAGCTGCACCTATTAAGATGGTGGCTCAAGCTAAGCAGTGGCTTGTGAAGAACAAGGTTTGTGAAGGATATACAGTTGTGGAAGAGAAAGGGTGCTTGGTGCTTGGATGGAAATCAAGGCCAATTGTTGCAGTTTCTTGCTGGAAATGCTGA 1560 0.4269 MSPPLYSDFKGELMDENPVFFLDLCSMGSHSYSHLPIFDSSDSNWTLPFSNETIRENKRVKRTIDIPFYFGNFSSHSSISCNSSRDSSCYSSLSSVNSITRLHFRDHIRTYKQRYPAEAVEEAVEDMHNSEIVGTEEDGCADGMLRLVELLIACAEAVACRDKAHASILLSELKANALVFGTSFQRVASCFVQGLTERLTLIQPIGPIGVTQSMMNIMDAASEEMEEAFRLVYEICPHIQFGHFVANATILEAFEGESFVHVVDLGMSLGLPHGHQWRRLIQSLANRTSHRVRRLRITAVGLCISRLQTIGEELSVYANNLGIHLEFSVVQKNLENLQPEDIKLNEEEVLVVNSILQLHCVVKESRGALNSVLQMIHRLSPKVLVMVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDVMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPLRMERHEKVDQWRRRMSRAGFQAAPIKMVAQAKQWLVKNKVCEGYTVVEEKGCLVLGWKSRPIVAVSCWKC. 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01674 519 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 118 513 IPR005202 -
Seca11g01674 519 Pfam GRAS domain family 147 518 IPR005202 -
Seca11g01674 519 ProSiteProfiles GRAS family profile. 138 518 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01674 Seca-Chr11 19230188 19232832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01674 145 518 GRAS Transcription Factor Family AT1G66350 36.939 5.68e-74 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca11g01674 GRAS 3.5e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01674 - - gmx:100813548 757.673