Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01664 ATGGAGATGGTTTTAAATAGAAGTGAGGAGGATAAGAGGAAGCCTTCTGATTTGGACTCAGACAGAGAAAATGAGTGTGGAATCTGCTTAGAGTCCTGCACCAAAATAGTTTTGCCTAATTGCTGCCATGCAATGTGTATAAATTGTTACAATGACTGGAACACAAGGTCAGAATCTTGTCCATTTTGCCGGGGAAGTTTAAAGAGAGTTAACTCAGGGGATTTGTGGGTTCTAACAAGCAGCAGCGAAGTAATTGATGTGCAAACCATATACAGAGAAGATATGTTGCGTCTCTATCTCTTTGTAAATAACCTACCAGAATATATCCCAGATTCTCTTTTCCTTATGTATCATGAGTACTTATTTTAA 369 0.3821 MEMVLNRSEEDKRKPSDLDSDRENECGICLESCTKIVLPNCCHAMCINCYNDWNTRSESCPFCRGSLKRVNSGDLWVLTSSSEVIDVQTIYREDMLRLYLFVNNLPEYIPDSLFLMYHEYLF. 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01664 122 SUPERFAMILY RING/U-box 15 69 - -
Seca11g01664 122 FunFam RING/U-box superfamily protein 6 73 - -
Seca11g01664 122 ProSiteProfiles Zinc finger RING-type profile. 26 64 IPR001841 -
Seca11g01664 122 PANTHER RING FINGER PROTEIN 41, 151 9 120 - -
Seca11g01664 122 Pfam Ring finger domain 24 64 IPR001841 -
Seca11g01664 122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 73 IPR013083 -
Seca11g01664 122 MobiDBLite consensus disorder prediction 1 23 - -
Seca11g01664 122 ProSitePatterns Zinc finger RING-type signature. 41 50 IPR017907 -
Seca11g01664 122 SMART ring_2 26 63 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01664 Seca-Chr11 19141129 19143617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01664 25 102 C3H Transcription Factor Family AT2G20030 35.294 2.15e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01664 - - qsu:112000041 209.149