Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01660 ATGGAACCCTCTGAATCCGATTCAGTTGCTGTTTCCAATGGTGAAGACCCTCAATTGGGTTCTGAGAAGGCACCTTCTTCCCCTGGTGCCCTTCCTTCACCGCCAGATCTCAATCACACTGTCGAGGAGGAAGCACTTGGTGGGGAACTTCAGAACAAGTTGGATTTGAAGGATGAAGATGAAGGGGACACCGAAACTGGGGAGAAAGTTGAGAAAGTTTCGGACTTTAACGATGGTGGACAAGTTTGCGATGAAGAATCCGTTAAGTGTGAAGTGTTTGATGGATATAGCAGGGGTTGGGAGACCAATAGTTGGAATGAGAATGTGAATGAAGAGGTGGGTAGAGATGGAGATGTTGATGGGTATGGAGATGGAGATGGGGATGTTGATGGGTATGGGGATGTTGATGGTGATGGAGTGGAAAAGAAGGAAGAGAAAAGCAGTGGTAGAACTCGCCACTACCCTTTGAGGCCTGAAGCTGAAGATTGTGCATTCTACATGAAGACTGGGACTTGCAAGTTTGGGTTCAATTGCAAGTTTAACCACCCCATTAGGAGGAAAAATCAGGCTGTTAAGGAGAAGACAGGAGAAAGAGAAGAACCAACAGAAAGATCAAGCCCAACAGAATGCAAGGTTATTGTCAAATTATGGCAGTATTATCAAAGGTCTGGTGGTTGTAAGTTTGGAAAAGCTTGTAAATATAACCACCCCAAAGGAAAATCTTCAACAGCACCAATTTTAGAACTTAACTTTCTCGGCCTACCTATTCGTCTGGGGGAGAAAGAATGCCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGATCAAACTGCAAGTTTAATCATCCTGACCCTACAGCTGTTGGAGGATGTGATCCTCCTTCAGGGTATGGTAATGGAGGGTCTATTTCATTACAAGGTGTATCACAATCATCTGTACCCTCCTGGTCCTCTCCAAGAACATTAAATGAAACATCTTTTGTGCCAATGATGGTTTCACCTGCTCAAGGAGTTTCTCCCCAAAGTTCTGATTGGAATGGATATCAGGCACCTGTCTACCTATCTGAGAGGAGCATGCGTCCATCTTCTACATATGTCATGAACAATCCAGCAATTGAAACAAATATTTACATGCGCCATCAAAAGCAGATGCCAGTAGAAGAGTTTCCAGAAAGGCCTGGAGAACCTGAATGCAGCTACTTCTTAAAAACTGGGGATTGCAAGTATAAAGCTAACTGTAAATTTCACCACCCAAAGAATCGGGTTGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTACCTCTGAGACCTGACCAGAATGTCTGCTCACACTATAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAATAAACTCAATGCCCTTAATGATGCCTGGACTTGGCCAGCAATCCTACACAAACTCATCTGATGTTGAGGTAGATGGACTGGGTGGAAGTGCAGGTGCAAGTGATGTGATGGTTCAGCAATCTGTGTAA 1521 0.4444 MEPSESDSVAVSNGEDPQLGSEKAPSSPGALPSPPDLNHTVEEEALGGELQNKLDLKDEDEGDTETGEKVEKVSDFNDGGQVCDEESVKCEVFDGYSRGWETNSWNENVNEEVGRDGDVDGYGDGDGDVDGYGDVDGDGVEKKEEKSSGRTRHYPLRPEAEDCAFYMKTGTCKFGFNCKFNHPIRRKNQAVKEKTGEREEPTERSSPTECKVIVKLWQYYQRSGGCKFGKACKYNHPKGKSSTAPILELNFLGLPIRLGEKECPYYMRTGSCKFGSNCKFNHPDPTAVGGCDPPSGYGNGGSISLQGVSQSSVPSWSSPRTLNETSFVPMMVSPAQGVSPQSSDWNGYQAPVYLSERSMRPSSTYVMNNPAIETNIYMRHQKQMPVEEFPERPGEPECSYFLKTGDCKYKANCKFHHPKNRVARLPPCNLSDKGLPLRPDQNVCSHYSRYGICKFGPACKFDHPINSMPLMMPGLGQQSYTNSSDVEVDGLGGSAGASDVMVQQSV. 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01660 506 ProSiteProfiles Zinc finger C3H1-type profile. 438 466 IPR000571 GO:0046872
Seca11g01660 506 PANTHER PROTEIN PHOSPHATASE RELATED 51 477 - -
Seca11g01660 506 SUPERFAMILY CCCH zinc finger 436 464 IPR036855 GO:0046872
Seca11g01660 506 MobiDBLite consensus disorder prediction 1 15 - -
Seca11g01660 506 ProSiteProfiles Zinc finger C3H1-type profile. 211 239 IPR000571 GO:0046872
Seca11g01660 506 ProSiteProfiles Zinc finger C3H1-type profile. 157 185 IPR000571 GO:0046872
Seca11g01660 506 ProSiteProfiles Zinc finger C3H1-type profile. 257 285 IPR000571 GO:0046872
Seca11g01660 506 MobiDBLite consensus disorder prediction 112 154 - -
Seca11g01660 506 Gene3D - 214 289 - -
Seca11g01660 506 Gene3D - 437 484 - -
Seca11g01660 506 SUPERFAMILY CCCH zinc finger 156 185 IPR036855 GO:0046872
Seca11g01660 506 SUPERFAMILY CCCH zinc finger 258 284 IPR036855 GO:0046872
Seca11g01660 506 MobiDBLite consensus disorder prediction 1 78 - -
Seca11g01660 506 ProSiteProfiles Zinc finger C3H1-type profile. 392 420 IPR000571 GO:0046872
Seca11g01660 506 MobiDBLite consensus disorder prediction 42 60 - -
Seca11g01660 506 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 218 238 IPR000571 GO:0046872
Seca11g01660 506 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 441 464 IPR000571 GO:0046872
Seca11g01660 506 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 161 183 IPR000571 GO:0046872
Seca11g01660 506 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 394 419 IPR000571 GO:0046872
Seca11g01660 506 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 283 IPR000571 GO:0046872
Seca11g01660 506 Gene3D - 348 428 - -
Seca11g01660 506 Gene3D - 138 195 - -
Seca11g01660 506 SUPERFAMILY CCCH zinc finger 397 421 IPR036855 GO:0046872
Seca11g01660 506 MobiDBLite consensus disorder prediction 135 154 - -
Seca11g01660 506 SMART c3hfinal6 216 238 IPR000571 GO:0046872
Seca11g01660 506 SMART c3hfinal6 392 419 IPR000571 GO:0046872
Seca11g01660 506 SMART c3hfinal6 438 465 IPR000571 GO:0046872
Seca11g01660 506 SMART c3hfinal6 157 184 IPR000571 GO:0046872
Seca11g01660 506 SMART c3hfinal6 257 284 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01660 Seca-Chr11 19115737 19119667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01660 384 480 C2H2 Transcription Factor Family AT3G02830 33.566 7.11e-17 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca11g01660 zf-CCCH 1.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01660 - - gmx:100786894 718.383