Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01659 ATGGCGGGTTCGGAGGAGGTTTTCCCGTGGTTGAAATCTCTGCCGGTGGCGCCGGAGTACCGGCCGAGCGCGGCGGAGTTCCAAGATCCGATCGGTTACATTTTTAAGATCGAGAAAGAAGCATCAAAATACGGAATCTGTAAGATCATTCCTCCGGTTCCCCCTTCCCCTAAGAAAACCGCAATTTCGAACCTGAACCGGTCCCAACCCCGGTTCACCACACGACAGCAACAGATCGGGTTCTGCCCTCGGCGACCCCAACCGGTTCGGCGACCGGTCTGGCACAGCGGTCACCACTACTCATTTCGCGACTTCGAGGCCAAAGCCAAAGCGTTCGAGAAAAGCTACCTCAAGAAAGGTAAAAAGTGCGCTTCAACGGTTTCCCCTCTCGAAGTGGAGACTCTGTATTGGAAGGCCACCGCTGATAAGCCCTTTTCCGTTGAGTATGCAAACGACATGCCAGGCTCTGCGTTTGTTCCTGCAAACGACGGAGGAGGAGGTGGAGACAACGTAACGGTTGGCGAGACTGCGTGGAATATGAGAGCGGTTTCGAGGGCAAATGGTTCTCTGTTGAGGTTCATGAAAGAGGAGATTCCTGGAGTGACTTCACCTATGGTGTATGTTGCTATGTTATTCAGCTGGTTCGCTTGGCATGTGGAGGACCATGACTTGCATAGCTTGAATTACCTTCACATGGGTGCTCCAAAGACATGGTATGGTGTGCCTAGAGACGCAGCCGTTGCATTCGAGGAAGTTGTTAGAGTTCATGGCTATGGAGGAGAGATTAACCCTCTTGTTACTTTTGCTATTCTTGGTGAGAAAACTACAGTGATGTCGCCAGAAGTATTCATTAGCGCGGGTGTTCCCTGCTGCAGATTAGTGCAAAATGCTGGGGAATTTGTGGTGACGTTTCCGAGAGCATATCACACAGGATTTAGTCACGGTTTTAATTGTGGAGAGGCAGCTAACATTGCAACACCTGAATGGTTGAGGGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCAATTAATTATCCTCCTATGGTTTCACATTTCCAGTTACTTTATGACCTTGGCCTTGCTTTGTGTTCTAGAATCCCTGGAGGCATGAGCACTGAACCACGGAGTTCTCGACTTAAAGATAAGAGAAAGGGTGTAGGAGAAACTGTAATTAAAGAACTATTTGTACAGGACGTGTTACGGAATAATGATCTGCTTCACGTACTTGGCAAAGGATCTGCTATAGTACTTCTTCCTCGTAGCTCTTCTGACATTTCTGTTTGCTCAAAATTACGTGTTGGGTCTCAACAACTAAAAGTGAACACTGAGTTTTCTCTCAATGAATGCAATTCTGAGGGAATGAATTCCTCAAAAGGTTTTATTTCTGATGACCTGGTGTTCAACAGGAACCATGGAATAAAAAAAGTAAAAGGTTTTTATTCTGTAAAAGAAAAATTTGCTTCATTGTGTGAAAGGAACAGGGTTTGTTCATTCGGTGCGAATGGTAACATATGCACGTCAAGTTCAAAAACACTGCAAAGTGACACTGAAAATGAAACAAGTCAAGGAGATGGATTGTCAGATCAGAGATTATTTTCATGTGTCACATGCGGAATATTAAGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGAACCAGCATCTAGATACCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGACCGTTGGTTCTGGAGTAACTAGCAATAAATTTACTGTTGCCCATGAAGATGCAAGTATTCCCAAGCCCAGCACATATACAGGATGGACAAAACAGAATGCTGGAAATGATGTGTATGATGCTCCTGTTGAATCTATTGAACAACAGACACAGATTGCTGATCATAATTCCAAGGAGGCTTTAAATACTGAAAGAAAAAAAGGCAATACAGCTCTTGCACTATTGGCTTCAGCATATGGAAATTCTTCCGACTCTGAGGAAGATCAGGGTGACTCAGATATTGCAGCTGACGGTGGTGAATTGAATGTGATGAAGCATCCATCAGCAAGTAGATCTCAGGAGATACCTTGTTTGCCTTCTCATTTTCAAGATTACCATGGTAGTCCCATGGTTAGACTTGATGGAGGAGATGATAATCCTTCGGAGAGTATTGGCAATTATGAGTATTATATGCATAAGAGAGTTGAGCGCATTATGAGCCCGTTTGACTACTCTGTTAAGTCAGAAGATTGTAACATCACTTCAGGGGGAGCATTTAAAAATAATAGGGCAGTACCTTATTCCACCATGAATTGTTCTCAAGATACTCATGCTGCAACGTCATTAATGGGCAAAACTGCGATTCCCATTGATAATAAAAATGTTTCATTGGGGGCACCATCTGATGAAGACTCGTCTAGAATGCATGTCTTCTGTCTAGAGCACGCTGCAGAAGCAGAGCAGCAACTTCGTCCAATTGGAGGTGCCCACATATTGCTCCTATGTCATCCAGATTATCCGAAGATAGAGGCTGAAGCAAAGTTTGTGGCAGAAGAATTGGGGATTGATTACATGTGGAAGAATACTGTATACAGGCATGCCAACAGGGAAGACGAGGAGAGGATCCAATCATCTCTGGATGGTGAGGAAGCTATTCCTGGGAATGGGGACTGGGCTGTGAAGCTGGGAATCAATCTCTTTTATAGTGCCAATCTTAGCCGCTCTCCACTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATATAATGCGTTTGGTCGTAGCACTCCATCAAGCTCTCCCATAGAACCCAAGGTCTATCGGAGAAGGGCTAACAAACAGAAAAAGGTAGTTGCTGGGAAATGGTGCGGCAAAGTTTGGATGTCCAATCAAGTCCATCCCCTTTTAGCAAAAAGAGATTCTGAAGATGTTGAGGATGAGAAAAGCTTACATGGGTGGTCATTACCTGATGAGAAACTTGAGAGATCAGAAATTACCCACAAAAGCAATACTACAATTAAAAAATTTGGTAGGAAAAGGAAAATGACTGTGGAGAGTGGAGAAGCCAGGGAAGGAAGTATTGCTGAGAGAGATTGGCTATCAGATGATTCAATTGAAGATAAATCCAATCAATCTCGAAGGAAGATTCTTCGAAGTAAGCGAACTAGGCCTATTGAGAGAGATGATACTGCTTCAGAAGGGGATTATTCTCCTCTGCAGCATCATAGAAAGCCTATAAGCAAGCGTGCAAAATGCATTGAAAGTGATGCAGTTTCAGATGATTCACTGGATGATAATACTCATATACAGCATTGGAGGAAGGCTAATGCCAAGGAAGCTAAATTTATTGACAGTGATGTGGTTTCAGATGACACAATGGACTATGATTTTGATTGGGCACAGAGGGGAGAGCTTAGCGACAAGCAAGATGTTATTTCAGAAGACTCATTGGGTGTTGGTTCTCTTCAGCTGCAAAGAAAAACTCCTAAAAGCAAGTATGATCAATACATTGCCGAAGAAGATGTGATTTCTAATGATGAAACAGAAGTTTATTTTCAGAAGCAGAAAGGGAGGATATCTAAAAGTAGGCATCACAAATTCCTTTCTGAAAAAGAGACAGTGATATCTGATGACCAACTGGAGCACCACATGCAGAAGCAGCAACGGAGACATCCTAAAAGCAGGCAAGACAAATACCTTTCTGGAGAGGATATTATATCTGATGATCAACTGGAGGGTCATTGTCGCAAGTATCAAAGAAGGATTCCTAAAAGCAGGCAAGCCAAATGTGTTACTGGGGAAGATGTAGTGTCTGATGACCAGTTGGATGATCACTTTCAGAAGCCCCAAAGGAATGTTCGAAGGAGCAGGCAAAATAAATACAATGATAGAGAAGTTGTGGATGACTCAACTGAAAATAATTCTCATCTGTTGTACAGAACTCCTAAAAGAAAGCAAGCTAAATGCATGGATGAAGACCCTGTAAGTTCAGATGATCAAGTAGAGGATGATTCTCATCAGCAACATGGGAGAACTCTTCGAAGTAAGCAATCTAAACCACAACCACAGACTCTTAAACATATGAAACAAGCTAACCCTCTCCATGTGAGAAGCATGACATCCCGGCCTGTGAAACGAGGTGCTCTCATGCTAATGAAATCAAAGGCTCCTCGGCAAATGAAGCAGCAGCCTCGTGTATGGAATAGTCAATCTGGTAACTCCAGAGACGAGACTTTACATATTGAAGAGGAGGAAGAAGGTGGACCTAGCACAAGGCTTAGGAAGAGAGTTCCAAAAATTCAGAAGGAATCTGAAGGAAAATCAAAAGAGAAGGAAACCAAAAAGAAAAAAGTGAAGAATGCCACAGCTGCAAAGGTTTCAGCTGGCCAGGCCAAAGTGAAGGATGAGGAAGGTGAATACCAGTGTGATATTGAGGGGTGTAACATGAGTTTTGGGTCTAAACAGGAGCTGGTGCATCATAAGAGAAATATCTGTCCTGTGAAAGGATGTGGAAAGAAATTTTTCTCACACAAATATCTGGTGCAGCACCGTCGAGTTCATGAGGATGACCGTCCCCTGAAGTGCCCTTGGAAGGGGTGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAACATATTCGAGTCCACACTGGTGCTCGTCCATATGTATGTGCTGAGGCAGGGTGTGGGCAAACCTTCAGATTTGTTTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAGCAAAGAAGAATCGTTGA 4734 0.4349 MAGSEEVFPWLKSLPVAPEYRPSAAEFQDPIGYIFKIEKEASKYGICKIIPPVPPSPKKTAISNLNRSQPRFTTRQQQIGFCPRRPQPVRRPVWHSGHHYSFRDFEAKAKAFEKSYLKKGKKCASTVSPLEVETLYWKATADKPFSVEYANDMPGSAFVPANDGGGGGDNVTVGETAWNMRAVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAPKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLGLALCSRIPGGMSTEPRSSRLKDKRKGVGETVIKELFVQDVLRNNDLLHVLGKGSAIVLLPRSSSDISVCSKLRVGSQQLKVNTEFSLNECNSEGMNSSKGFISDDLVFNRNHGIKKVKGFYSVKEKFASLCERNRVCSFGANGNICTSSSKTLQSDTENETSQGDGLSDQRLFSCVTCGILSFSCVAIVQPREPASRYLMSADCSFFNDWTVGSGVTSNKFTVAHEDASIPKPSTYTGWTKQNAGNDVYDAPVESIEQQTQIADHNSKEALNTERKKGNTALALLASAYGNSSDSEEDQGDSDIAADGGELNVMKHPSASRSQEIPCLPSHFQDYHGSPMVRLDGGDDNPSESIGNYEYYMHKRVERIMSPFDYSVKSEDCNITSGGAFKNNRAVPYSTMNCSQDTHAATSLMGKTAIPIDNKNVSLGAPSDEDSSRMHVFCLEHAAEAEQQLRPIGGAHILLLCHPDYPKIEAEAKFVAEELGIDYMWKNTVYRHANREDEERIQSSLDGEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYNAFGRSTPSSSPIEPKVYRRRANKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDEKSLHGWSLPDEKLERSEITHKSNTTIKKFGRKRKMTVESGEAREGSIAERDWLSDDSIEDKSNQSRRKILRSKRTRPIERDDTASEGDYSPLQHHRKPISKRAKCIESDAVSDDSLDDNTHIQHWRKANAKEAKFIDSDVVSDDTMDYDFDWAQRGELSDKQDVISEDSLGVGSLQLQRKTPKSKYDQYIAEEDVISNDETEVYFQKQKGRISKSRHHKFLSEKETVISDDQLEHHMQKQQRRHPKSRQDKYLSGEDIISDDQLEGHCRKYQRRIPKSRQAKCVTGEDVVSDDQLDDHFQKPQRNVRRSRQNKYNDREVVDDSTENNSHLLYRTPKRKQAKCMDEDPVSSDDQVEDDSHQQHGRTLRSKQSKPQPQTLKHMKQANPLHVRSMTSRPVKRGALMLMKSKAPRQMKQQPRVWNSQSGNSRDETLHIEEEEEGGPSTRLRKRVPKIQKESEGKSKEKETKKKKVKNATAAKVSAGQAKVKDEEGEYQCDIEGCNMSFGSKQELVHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEAGCGQTFRFVSDFSRHKRKTGHSAKKNR. 1578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01659 1577 ProSiteProfiles JmjC domain profile. 175 341 IPR003347 -
Seca11g01659 1577 SMART c2h2final6 1485 1509 IPR013087 -
Seca11g01659 1577 SMART c2h2final6 1545 1571 IPR013087 -
Seca11g01659 1577 SMART c2h2final6 1462 1484 IPR013087 -
Seca11g01659 1577 SMART c2h2final6 1515 1539 IPR013087 -
Seca11g01659 1577 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 1511 - -
Seca11g01659 1577 ProSitePatterns Zinc finger C2H2 type domain signature. 1547 1571 IPR013087 -
Seca11g01659 1577 MobiDBLite consensus disorder prediction 1043 1064 - -
Seca11g01659 1577 Pfam jmjN domain 18 51 IPR003349 -
Seca11g01659 1577 MobiDBLite consensus disorder prediction 1383 1397 - -
Seca11g01659 1577 Pfam JmjC domain, hydroxylase 205 323 IPR003347 -
Seca11g01659 1577 FunFam Probable lysine-specific demethylase ELF6 1512 1541 - -
Seca11g01659 1577 MobiDBLite consensus disorder prediction 1398 1441 - -
Seca11g01659 1577 MobiDBLite consensus disorder prediction 1032 1070 - -
Seca11g01659 1577 ProSiteProfiles Zinc finger C2H2 type domain profile. 1545 1576 IPR013087 -
Seca11g01659 1577 MobiDBLite consensus disorder prediction 648 668 - -
Seca11g01659 1577 ProSiteProfiles JmjN domain profile. 17 58 IPR003349 -
Seca11g01659 1577 FunFam Probable lysine-specific demethylase ELF6 10 345 - -
Seca11g01659 1577 MobiDBLite consensus disorder prediction 1263 1293 - -
Seca11g01659 1577 SMART JmjN_1 16 57 IPR003349 -
Seca11g01659 1577 SUPERFAMILY beta-beta-alpha zinc fingers 1501 1543 IPR036236 -
Seca11g01659 1577 ProSiteProfiles Zinc finger C2H2 type domain profile. 1485 1514 IPR013087 -
Seca11g01659 1577 ProSitePatterns Zinc finger C2H2 type domain signature. 1517 1539 IPR013087 -
Seca11g01659 1577 MobiDBLite consensus disorder prediction 1336 1350 - -
Seca11g01659 1577 Gene3D Cupin 10 345 - -
Seca11g01659 1577 SUPERFAMILY Clavaminate synthase-like 187 341 - -
Seca11g01659 1577 SUPERFAMILY beta-beta-alpha zinc fingers 1533 1567 IPR036236 -
Seca11g01659 1577 ProSitePatterns Zinc finger C2H2 type domain signature. 1487 1509 IPR013087 -
Seca11g01659 1577 Gene3D Classic Zinc Finger 1483 1569 - -
Seca11g01659 1577 ProSiteProfiles Zinc finger C2H2 type domain profile. 1515 1544 IPR013087 -
Seca11g01659 1577 SMART cupin_9 172 341 IPR003347 -
Seca11g01659 1577 FunFam Probable lysine-specific demethylase ELF6 1542 1571 - -
Seca11g01659 1577 MobiDBLite consensus disorder prediction 1198 1227 - -
Seca11g01659 1577 MobiDBLite consensus disorder prediction 1263 1443 - -
Seca11g01659 1577 MobiDBLite consensus disorder prediction 1306 1333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01659 Seca-Chr11 19099651 19109339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01659 796 897 C2H2 Transcription Factor Family AT5G04240 33.333 7.97e-14 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca11g01659 JmjC 2.9e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01659 - - gmx:100775813 2135.15