Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01656 ATGGCAATGGACAGGCATGATAAGGAGAAAGAAATGGCTTCTGTTCTGCTTTCAGCATTGTATGCTGATGTTATTAGTCCATCACAGATTAGGGACGGATTTTTTATGCTTCTTGAATCTGCCGATGATCTTGCAGTAGATATACTGGATGCAGTGGATATCCTTGCTTTATTCCTGGCACGTGCTGTTGTTGATGACATTCTTCCTCCAGCTTTTCTTGCCAGGGCACGGAAGGCTCTTCCAGAATCTTCCAATGGAGTTCAGGTAATCCAGACTGCTGAGAAGAGTTATCTCTCAGCTCCACATCATGCTGAACTTGTGGAAAGGCGATGGGGTGGTAGCACTCACATCACTGTTGAAGAAGTGAAGAAGAAGATTGCTGATTTACTTAGAGAATATGTGGATAGTGGTGATGCATTTGAAGCCTGTAGGTGCATACGTGAATTGGGGGTTTCATTCTTTCATCATGAGGTTGTGAAGAGGGCTTTGGTACTTGCCATGGAGATTCGTTCGGCAGAACCTCTAATGTTGAAGCTATTGAAAGAAGCAGCAGAAGAAGGACTCATTAGTTCTAGTCAAATGGTGAAAGGGTTTTCTCGTTTGGCAGAAGGGCTAGATGATCTTGCTCTTGATATTCCATCAGCTAAAGCCTTGTTTGAGTCATTTGTCCCAAAGGCAATATCTGAAGGATGGCTTGATGCTTCTTCATTGACCAAACCTGCTGGTGAAGATGGGGAAATCCAAGTTGAAGATGAGAGGGTGAGGAAGTACAAAAAGGAAGCTGTAACTATAATTCATGAGTATTTTCTCTCTGATGACATTCCTGAACTCATCCGGAGTCTTGAAGATCTTGGAGCACCTGAGTATAACTCAATATTTTTGAAGAAGCTAATAACTCTTGCCATGGACAGAAAGAACAGAGAAAAAGAAATGGCATCTGTACTGCTATCTGCTCTTCATATAGAGATCTTCTCTACAGAGGACATAGTTAATGGTTTTGTCATGCTTCTGGAAAGTGCAGAAGATACAGCACTGGATATATTGGATGCTTCAAATGAGCTTGCTCTTTTCTTAGCACGGGCTGTGATTGATGATGTATTGGTCCCGTTGAATTTGGAAGAAATTGGCAGCAGGTTACCACCAAATTGTAGCGGTAGTGAAACTGTGCGTATGGCTCGATCACTCATTGCTGCTCGTCATGCTGGGGAAAGGCTATTGAGATGCTGGGGTGGAGGGACTGGATGGGCTGTGGAAGATGCTAAGGACAAGATCATGAAGCTCTTGGAGGAGTACGAAAGTGGTGGGGTTGTGAGTGAAGCATGTCAGTGTATTCGTGACCTGGATTTGCCTTTCTTTAACCATGAGGTGGTGAAGAAAGCTTTGGTTATGGCCATGGAGAAGAAGAATGATAGGATGCTAGATCTGCTGCAGGAGTGCTTTAGTGAAGGCCTGATCACAATCAATCAGATGACTAAAGGGTTCACCCGAGTTAAGGATGGTCTTGATGATCTGGCTCTGGACATTCCAAACGCAAAGGAAAAATTTGGCTTCTATGTGGAGCATGCACAGAAGAAAGGCTGGCTTCTACCTTCATTTGATTCATCTGCCTCAGACGTCTAA 1620 0.437 MAMDRHDKEKEMASVLLSALYADVISPSQIRDGFFMLLESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALPESSNGVQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVDSGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRSAEPLMLKLLKEAAEEGLISSSQMVKGFSRLAEGLDDLALDIPSAKALFESFVPKAISEGWLDASSLTKPAGEDGEIQVEDERVRKYKKEAVTIIHEYFLSDDIPELIRSLEDLGAPEYNSIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLVPLNLEEIGSRLPPNCSGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLDLPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITINQMTKGFTRVKDGLDDLALDIPNAKEKFGFYVEHAQKKGWLLPSFDSSASDV. 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01656 539 Gene3D - 248 400 - -
Seca11g01656 539 Gene3D - 1 98 - -
Seca11g01656 539 SUPERFAMILY ARM repeat 416 534 IPR016024 -
Seca11g01656 539 FunFam Programmed cell death protein 4 107 241 - -
Seca11g01656 539 FunFam Programmed cell death protein 4 405 538 - -
Seca11g01656 539 SUPERFAMILY ARM repeat 255 412 IPR016024 -
Seca11g01656 539 SUPERFAMILY ARM repeat 1 115 IPR016024 -
Seca11g01656 539 SUPERFAMILY ARM repeat 118 239 IPR016024 -
Seca11g01656 539 ProSiteProfiles MI domain profile. 256 377 IPR003891 -
Seca11g01656 539 SMART ma3_7 420 529 IPR003891 -
Seca11g01656 539 SMART ma3_7 1 69 IPR003891 -
Seca11g01656 539 SMART ma3_7 257 368 IPR003891 -
Seca11g01656 539 SMART ma3_7 122 233 IPR003891 -
Seca11g01656 539 FunFam programmed cell death protein 4 246 400 - -
Seca11g01656 539 ProSiteProfiles MI domain profile. 419 538 IPR003891 -
Seca11g01656 539 ProSiteProfiles MI domain profile. 1 78 IPR003891 -
Seca11g01656 539 ProSiteProfiles MI domain profile. 121 242 IPR003891 -
Seca11g01656 539 Pfam MA3 domain 258 367 IPR003891 -
Seca11g01656 539 Pfam MA3 domain 1 69 IPR003891 -
Seca11g01656 539 Pfam MA3 domain 421 528 IPR003891 -
Seca11g01656 539 Pfam MA3 domain 122 233 IPR003891 -
Seca11g01656 539 PANTHER PROGRAMMED CELL DEATH 4 1 533 IPR039778 GO:0045892
Seca11g01656 539 Gene3D - 407 536 - -
Seca11g01656 539 Gene3D - 108 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01656 Seca-Chr11 19050775 19055667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01656 423 516 Eukaryotic Initiation Factors Gene Family AT4G30680 32.990 1.67e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01656 - - gmx:100809081 967.222